PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008226652.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 309aa    MW: 33691.6 Da    PI: 7.5002
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008226652.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.0005125147123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C+ C++sF++   L  H  +H
  XP_008226652.1 125 YECKTCNRSFPSFQALGGHRASH 147
                     99**********99999998887 PP

2zf-C2H213.20.00027203225123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++Cg  F++   L  H+r+H
  XP_008226652.1 203 HECSICGSEFTSGQALGGHMRRH 225
                     78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.2E-13124149IPR007087Zinc finger, C2H2
SuperFamilySSF576676.33E-9124147No hitNo description
SMARTSM003550.06125147IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.72125152IPR007087Zinc finger, C2H2
PROSITE patternPS000280127147IPR007087Zinc finger, C2H2
SuperFamilySSF576676.33E-9198225No hitNo description
PfamPF139122.0E-11203227IPR007087Zinc finger, C2H2
SMARTSM003550.019203225IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.993203230IPR007087Zinc finger, C2H2
PROSITE patternPS000280205225IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MEGQEELVLS SDQASQAIMI KGKRTKRPRP LSPNGVVATG TSSSSSACGG GGAMGGDHEY  60
NYYGNSFTSP TTSGEIYEST EEEEDMANCL ILLAQGDHVT VNPKQIFEQR LAQTSNMGKA  120
GFFVYECKTC NRSFPSFQAL GGHRASHKKP KAMSTEEKKP APAHFIPASP FEEFEDQSKQ  180
FIKYKSSPPP AISSQIGSKP KIHECSICGS EFTSGQALGG HMRRHRAAAA AANNSTNHVV  240
ALPSNIGTST KLQRTVLPLD LNLPAPEDND HHHHQLHHHH QHRDSKFQFV PTQQTTLVFN  300
APALVDCHY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12529KRPRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008226652.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008226652.10.0PREDICTED: zinc finger protein ZAT5
TrEMBLA0A251NQE60.0A0A251NQE6_PRUPE; Uncharacterized protein
TrEMBLM5WBK20.0M5WBK2_PRUPE; Uncharacterized protein
STRINGXP_008226652.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.13e-59C2H2 family protein