PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008225878.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family FAR1
Protein Properties Length: 888aa    MW: 102088 Da    PI: 8.3744
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008225878.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR178.61.2e-2495203191
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...................tekerrtraetrtgCkaklkvkkekdgkw 76 
                     +fY+eYAk+vGF  ++++s++s+ +g++++++f C+++g+++e++++                   +++ r +r+ ++t+Cka+++vk++ dg+w
  XP_008225878.1  95 SFYREYAKSVGFAAVIKASRRSRVSGKFIDAKFACTRYGSKRESSTAeapesvsnsressicssvkRKRGRASRSWEKTDCKACMHVKRQ-DGRW 188
                     5*****************************************999999***************998888899*****************9.**** PP

            FAR1  77 evtkleleHnHelap 91 
                      + ++ +eHnHe++p
  XP_008225878.1 189 IIRSFIKEHNHEIFP 203
                     ************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.8E-2295203IPR004330FAR1 DNA binding domain
PfamPF105511.5E-30322414IPR018289MULE transposase domain
PROSITE profilePS509669.198602638IPR007527Zinc finger, SWIM-type
PfamPF044341.4E-5611636IPR007527Zinc finger, SWIM-type
SMARTSM005752.7E-4613640IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 888 aa     Download sequence    Send to blast
MGIDLEQPSG EYHKEDNRRS VNNIVDGRGE ENHRAIVSVT NGPVKDKENA GQNVNGRVSD  60
TRNKTVTRDE INLNSSRDSE PRDGMEFESK EEAFSFYREY AKSVGFAAVI KASRRSRVSG  120
KFIDAKFACT RYGSKRESST AEAPESVSNS RESSICSSVK RKRGRASRSW EKTDCKACMH  180
VKRQDGRWII RSFIKEHNHE IFPDQAYYFR GHRNFDLGTG DADGLHAIRR RTKKMYVNMA  240
RQSGGYKKLD NQKGGGTNQS LSGKHLSLEE GDAQVMLDHF LYMQDENPNF FYAIDLNEEQ  300
RLRNVFWVDA KGKLDYGNFC DVVFLDTTYI KNEYKLPFVP FIGVNHHFQF ILLGCALLAN  360
ESKSTYVWLM RAWLKAMGGH APKVILSDQN KVLKEAIAEV LPDSRHCLCL WHILGKIPEK  420
LGYVIRQHDK FMVKFNKCIF KSWTNEQFEK RWWKMVERFN LRDDVWFQSL YEDREQWIPT  480
YMRDIFLAGM STTQRSESIN SFFDKYMQRK TTLKEFLEQY KTILREKYEE EVKADFETWH  540
KQPALRSPSP FGKQMATMYT HAIFKKFQVE VLGVVACHPK KETEDGAIKT FRVQDFEEDQ  600
DFVVAWNEMT SDISCFCHSF EFNGFLCRHV MIVLQMSGVH NIPSQYILKR WTKDAKNRQT  660
LREGSASVDC RVKRYNDICE RAFKLSDEGS LSQESYNIAF NALEEALRSC ESINNSIQSV  720
IEPISGETHG SEGVNQGNSK NKTNKKNGAS KKGQVQSEPE VITIGVQESW QQVEQLVSRA  780
PTLDGYFGSQ QIVQGTGQPS TIASSRDHYY SNQHMQGLGQ LNSIAPIHDA HYITQQRLHG  840
VLHFRPQSIP SCFDIPDGLQ DTDQSTVGPT QLHGLASRHL HSKDLSRQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:12753585, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:22634759}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008225878.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269|PubMed:18033885}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008225878.10.0PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1 isoform X4
SwissprotQ9SWG30.0FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1
TrEMBLM5WQ400.0M5WQ40_PRUPE; Uncharacterized protein
STRINGXP_008225874.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.10.0FAR1 family protein
Publications ? help Back to Top
  1. Domergue F, et al.
    Three Arabidopsis fatty acyl-coenzyme A reductases, FAR1, FAR4, and FAR5, generate primary fatty alcohols associated with suberin deposition.
    Plant Physiol., 2010. 153(4): p. 1539-54
    [PMID:20571114]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  3. Wang C, et al.
    SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes.
    J Genet Genomics, 2015. 42(4): p. 161-8
    [PMID:25953354]
  4. Wang W, et al.
    A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis.
    J Integr Plant Biol, 2016. 58(1): p. 91-103
    [PMID:25989254]
  5. Ma L, et al.
    Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1.
    Mol Plant, 2016. 9(4): p. 541-57
    [PMID:26714049]
  6. Siddiqui H,Khan S,Rhodes BM,Devlin PF
    FHY3 and FAR1 Act Downstream of Light Stable Phytochromes.
    Front Plant Sci, 2016. 7: p. 175
    [PMID:26941752]
  7. Liu L,Li B,Liu X
    FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis.
    Plant Signal Behav, 2016. 11(10): p. e1238545
    [PMID:27660915]
  8. Ma L,Xue N,Fu X,Zhang H,Li G
    Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar.
    New Phytol., 2017. 213(4): p. 1682-1696
    [PMID:27859295]
  9. Liu Y, et al.
    Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1.
    Plant Cell, 2017. 29(9): p. 2269-2284
    [PMID:28842534]
  10. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]