PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008225132.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 172aa    MW: 18269.6 Da    PI: 9.5399
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008225132.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.12.9e-201161256
             AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56
                    +y+GVr ++ +gr++AeIrd ++    ++r++lg+f+t+eeAa a++ a+++l+g+
  XP_008225132.1 11 HYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDTPEEAALAYDGAARSLRGA 61
                    69*******.**********883....5*************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.4E-351174IPR001471AP2/ERF domain
PROSITE profilePS5103222.7211168IPR001471AP2/ERF domain
PfamPF008473.0E-131160IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-221169IPR016177DNA-binding domain
CDDcd000181.16E-291169No hitNo description
Gene3DG3DSA:3.30.730.107.5E-321168IPR001471AP2/ERF domain
PRINTSPR003674.9E-111223IPR001471AP2/ERF domain
PRINTSPR003674.9E-113450IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MATASSSREG HYRGVRKRPW GRYAAEIRDP WKKTRVWLGT FDTPEEAALA YDGAARSLRG  60
AKAKTNFPAP VPGGLSLDLN IPSAAHWASH SGRLVEFLHT GVLNDMSCGD ATPDTTTLVS  120
KREQPQPPVG VVGNVGGVAG GTVAEGSSTA SYLGLVRRGL PIDLNEPPPL WL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-221174569ATERF1
3gcc_A2e-221174569ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00645PBMTransfer from LOC_Os05g41760Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008225132.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ0260030.0FJ026003.1 Prunus salicina ethylene responsive transcription factor 12 (ERF12) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008225132.11e-122PREDICTED: ethylene-responsive transcription factor 12
SwissprotQ94ID68e-48ERF81_ARATH; Ethylene-responsive transcription factor 12
TrEMBLC0J9I31e-121C0J9I3_9ROSA; Ethylene responsive transcription factor 12
STRINGXP_008225132.11e-122(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33034189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.14e-48ERF domain protein 12