PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008224368.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 138aa    MW: 15331 Da    PI: 7.5995
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008224368.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.71.7e-191767255
             AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                    +y+GVr ++ +g+++AeIrd    + + +r++lg+f taeeAa+a+++a+ +++g
  XP_008224368.1 17 RYRGVRKRP-WGKYAAEIRDS---NrHGARVWLGTFNTAEEAARAYDRAAYAMRG 67
                    6********.**********4...3234*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.73E-231777IPR016177DNA-binding domain
PROSITE profilePS5103223.5121775IPR001471AP2/ERF domain
PfamPF008476.8E-151767IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.6E-311776IPR001471AP2/ERF domain
CDDcd000186.48E-171775No hitNo description
SMARTSM003807.8E-351781IPR001471AP2/ERF domain
PRINTSPR003678.1E-121829IPR001471AP2/ERF domain
PRINTSPR003678.1E-124157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MDSRGKVMEE KEGGEVRYRG VRKRPWGKYA AEIRDSNRHG ARVWLGTFNT AEEAARAYDR  60
AAYAMRGGLA ILNFPTEYPA SGGSSSSSSS ANFSSSVAGT IQERGRGEHG NEVLELEYLD  120
DKLLEELLDC DHQKKNKK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-3411231114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008224368.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008224368.14e-98PREDICTED: ethylene-responsive transcription factor ERF095
SwissprotQ9LTC52e-39ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLM5Y0546e-70M5Y054_PRUPE; Uncharacterized protein
STRINGXP_008224368.12e-97(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23220.14e-24ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]