PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008224367.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 159aa    MW: 17670.3 Da    PI: 6.5519
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008224367.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.71.9e-202475256
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                    +y+GVr+++ +g++++eIrdps +g  +r +lg+f+taeeAa+a+++a+ +l+g+
  XP_008224367.1 24 RYRGVRRRP-WGKFASEIRDPSRQG--ARLWLGTFDTAEEAARAYDRAAFNLRGH 75
                    6********.**********96543..**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.0E-152475IPR001471AP2/ERF domain
CDDcd000184.00E-302483No hitNo description
SuperFamilySSF541711.63E-232483IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.3E-322484IPR001471AP2/ERF domain
SMARTSM003806.3E-382488IPR001471AP2/ERF domain
PROSITE profilePS5103224.792482IPR001471AP2/ERF domain
PRINTSPR003679.9E-122536IPR001471AP2/ERF domain
PRINTSPR003679.9E-124864IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MEDPRRGKDL QKQGMEEKGS EEVRYRGVRR RPWGKFASEI RDPSRQGARL WLGTFDTAEE  60
AARAYDRAAF NLRGHLAILN FPNEYYSQVM GSPPHPPRFS SSFSSSSSSS SSSSSAAAAA  120
APGGSSSTGQ GRQVFEIEYL DDQVLEDLLD SQEEKSKWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-33131443114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008224367.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008224367.11e-112PREDICTED: ethylene-responsive transcription factor ERF098
SwissprotQ9LTC53e-49ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A314XLK61e-92A0A314XLK6_PRUYE; Ethylene-responsive transcription factor ERF098
STRINGXP_008224367.11e-112(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.11e-38ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]