PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008224242.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family HSF
Protein Properties Length: 355aa    MW: 41033.6 Da    PI: 4.7356
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008224242.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind117.11e-36341262103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y+i++d+++++++sws+++nsfvvld+++f+ ++Lp+yFkh+nf+SFvRQLn+YgF+kv++++         weF+++ F +g+k+ll++
  XP_008224242.1  34 FLTKTYDIVDDPTTNDIVSWSRDNNSFVVLDPQKFSMRLLPRYFKHNNFSSFVRQLNTYGFRKVDTDR---------WEFANQGFLRGQKHLLKN 119
                     9*****************************************************************99.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i+r+k++
  XP_008224242.1 120 IRRRKTS 126
                     ****975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.6E-3929123IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.9E-5930123IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467856.12E-3630123IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.3E-3234123IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.4E-203457IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.4E-207284IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407397IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.4E-208597IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MNSDQDPVSL SSSGAAPDHP LPMEKLYDQG PPPFLTKTYD IVDDPTTNDI VSWSRDNNSF  60
VVLDPQKFSM RLLPRYFKHN NFSSFVRQLN TYGFRKVDTD RWEFANQGFL RGQKHLLKNI  120
RRRKTSYHPQ ASQKALDSCV EVGKFGLDGE IDQLRRDKQV LMGELVKLRQ QQQTTRVYLH  180
GMENRLKRTE MKQQHLRNFL ARAMQNPNFV QQLAQQKDKR NELEEAISKK RRRPIEQGPS  240
SFEVDELGQV GVETFVKVEP QEYDDISDHF ENPELDTFAI DMQGITGSQN VHDEEECMEK  300
EEGNESGSKD PGNSFWHELL NESIDEEIGM LGGQEEDEDV DVFVEELVYL ASSPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-273212618123Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008224242.10.0PREDICTED: heat stress transcription factor A-6b
SwissprotQ9LUH81e-122HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLM5XVS40.0M5XVS4_PRUPE; Uncharacterized protein
STRINGPOPTR_0010s09210.11e-146(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-116heat shock transcription factor A6B