PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008223290.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family GATA
Protein Properties Length: 136aa    MW: 14912.1 Da    PI: 10.3225
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008223290.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.96.7e-193266135
            GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                    C+ Cgt+kTplWR gp g+k+LCnaCG++ rkk++
  XP_008223290.1 32 CADCGTSKTPLWRGGPAGPKSLCNACGIRSRKKRR 66
                    ********************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.1632662IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.13E-132666No hitNo description
SMARTSM004011.1E-112684IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.1E-153066IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.37E-133185No hitNo description
PROSITE patternPS0034403257IPR000679Zinc finger, GATA-type
PfamPF003207.5E-173266IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MLDPSDKGSE SEEMNIKTPD VGSSEEGHKK TCADCGTSKT PLWRGGPAGP KSLCNACGIR  60
SRKKRRAILG LNKENPNDKK GKRNKQLGDG LKQRLLALGR EVLMQRSTVE RQRRKLGEEE  120
QAAVLLMALS YGSVYA
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00335DAPTransfer from AT3G06740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008223290.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007223794.14e-95GATA transcription factor 15
RefseqXP_008223290.14e-95PREDICTED: GATA transcription factor 15-like
RefseqXP_021806161.14e-95GATA transcription factor 15-like
RefseqXP_021819111.14e-95GATA transcription factor 15-like
SwissprotQ8LG106e-55GAT15_ARATH; GATA transcription factor 15
TrEMBLA0A314ZGC01e-93A0A314ZGC0_PRUYE; GATA transcription factor 15
TrEMBLM5XTT21e-93M5XTT2_PRUPE; Uncharacterized protein
STRINGXP_008223290.12e-94(Prunus mume)
STRINGEMJ249932e-94(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15693298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.12e-57GATA transcription factor 15
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  3. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]