PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008223039.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family FAR1
Protein Properties Length: 751aa    MW: 87218 Da    PI: 7.9783
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008223039.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR162.99.1e-2034108189
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                     +fY+ YA+++GF+vr+ + ++s+++g++ +r+fvCskeg++ +              +rtgC a ++v+++++gkw+v+ + ++HnH l
  XP_008223039.1  34 DFYSLYATRMGFRVRTGQLYRSRTDGSVSSRRFVCSKEGFQIS--------------SRTGCPALIRVQRRDSGKWVVDLFLKDHNHGL 108
                     6***************************************765..............699***************************98 PP

2FAR1675e-21188263190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     +fY+ YA+++GF++r+ +  +sk +g+it+r+fvCskeg++++              +r+gC a +++k++++g+w+v++l+++HnHel 
  XP_008223039.1 188 QFYHVYAENTGFRIRIGQLFRSKLDGSITSRRFVCSKEGFQHP--------------SRVGCGAFMRIKRQDSGRWVVDRLDKNHNHELE 263
                     6***************************************999..............4899***************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.0E-1534108IPR004330FAR1 DNA binding domain
PfamPF031011.3E-16188263IPR004330FAR1 DNA binding domain
PfamPF105518.4E-27362455IPR018289MULE transposase domain
PROSITE profilePS509669.977639673IPR007527Zinc finger, SWIM-type
SMARTSM005756.5E-6648675IPR006564Zinc finger, PMZ-type
PfamPF044349.6E-7650670IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 751 aa     Download sequence    Send to blast
MLPLKTVNAE DEGESRVLEP YVGLEFDSAD VARDFYSLYA TRMGFRVRTG QLYRSRTDGS  60
VSSRRFVCSK EGFQISSRTG CPALIRVQRR DSGKWVVDLF LKDHNHGLGS TEENHSPILQ  120
KKTLTRKNSI VELSHRPKIK SIEEIEDGRP CPSGIISAKR FKWDGDEMQP EVEPSAGLEF  180
NSANEAYQFY HVYAENTGFR IRIGQLFRSK LDGSITSRRF VCSKEGFQHP SRVGCGAFMR  240
IKRQDSGRWV VDRLDKNHNH ELESQLEVQK TNLFSSKKFI EEEIGGLENE DIVDINNGNN  300
VKRRRENHIG SDWYRVLFDY FQTKQAEDTG FFYAVEVDNG SCMSIFWADG RSRFSCCQFG  360
DVIILDTSYR KGIYLVPFAT FIGINHHKQP VLLGCALIAD ESEKSFTWLF QTWLRAMSGR  420
CPLSIIADQD DVIQHAIMQV FPGTHHRFSL WQFKAKESEH LRLMNTSFKY EYEKCIYECQ  480
TADEFDSAWN ALLSRYGLKD NGWLKAMYAK RKSWVPLYLR ATFFAGIPFN ESIESFFGTR  540
FNAQTQLKEF VSQYERGLER RREEERKEDF NSFNLQAFLQ TKEPLEEQCR RLYTLNIFRI  600
FQKELLQSYS YLGFKIYEEG ATIRYLVRKC GNDNEKCVVT VGPSNPKVIC SCRMFEFEGV  660
LCRHVLRVFQ ILDLKEVPPC YILQRWTKNA EYGIPCDSES GGNPQELKAL MVWSLREAAC  720
QYIEAGATSL EKHRLAYEIM REGGRKLCWQ R
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008223039.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008223038.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 7 isoform X1
SwissprotQ9M8J30.0FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBLA0A251QXS70.0A0A251QXS7_PRUPE; Uncharacterized protein
STRINGXP_008223038.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.10.0FAR1-related sequence 7
Publications ? help Back to Top
  1. Ritter A, et al.
    The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis.
    Nat Commun, 2017. 8: p. 15235
    [PMID:28492275]
  2. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]