PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008220077.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 258aa    MW: 28161.2 Da    PI: 4.8611
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008220077.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39.4e-1967117155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  XP_008220077.1  67 PVYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALSIKG 117
                     68*****998.**********843...6***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.0E-1367117IPR001471AP2/ERF domain
SMARTSM003801.5E-3668131IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-2168125IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.0E-3268126IPR001471AP2/ERF domain
PROSITE profilePS5103223.4268125IPR001471AP2/ERF domain
PRINTSPR003672.7E-106980IPR001471AP2/ERF domain
CDDcd000186.67E-3269127No hitNo description
PRINTSPR003672.7E-1091107IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MSSDQTQGSE TESSSNSFTS TTPPSSPSSL QNPLSANLQK PNSPIHQEIE LPGKKNTKRG  60
RDSSKHPVYR GVRMRNWGKW VSEIREPRKK SRIWLGTFPT PEMAARAHDV AALSIKGNSA  120
ILNFPELSDS LPRPVSLAPR DVQAAASKAA QMHQFDANPS MSCSMLSSSS SSSLSSLVSA  180
IDNLSTESEE LSEIVELPSL GYESTELRSE FVFVDSEDQW VYPPPWLQRL GDCGGGYVCD  240
ELGTPSSSGF EGSLWEYN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-1963125972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008220077.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT3695360.0KT369536.1 Prunus pseudocerasus AP2/EREBP family transcription factor-like protein 4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008220077.10.0PREDICTED: dehydration-responsive element-binding protein 3
SwissprotQ9LYD34e-76DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A0M4KET40.0A0A0M4KET4_9ROSA; AP2/EREBP family transcription factor-like protein 4
STRINGXP_008220077.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.15e-76ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,B├╝low L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]