PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008219733.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family FAR1
Protein Properties Length: 784aa    MW: 91065.9 Da    PI: 9.0786
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008219733.2genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR164.82.3e-2048154188
            FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk.................tekerrtraetrtgCkaklkvkkek.dgkw 76 
                     ++Y+eY+++ GF +r+++s+k+ +r +e+t+r+fvC  egk  +++++                  ++++++ ++ ++gCka++++k+++ ++kw
  XP_008219733.2  48 NYYEEYGRQEGFWIRTRSSSKTrRRLDEVTSRQFVCAHEGKYMPKNTShkasegnderdasdienMKRTSKNCSTVKCGCKASMRIKLDRwSNKW 142
                     69*************999888867889**************9999888999***********99777888899999******************* PP

            FAR1  77 evtkleleHnHe 88 
                     +v++++  HnH+
  XP_008219733.2 143 KVSSFQDSHNHK 154
                     ***********7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.6E-1748154IPR004330FAR1 DNA binding domain
PfamPF105514.7E-36273367IPR018289MULE transposase domain
PROSITE profilePS509669.94554590IPR007527Zinc finger, SWIM-type
SMARTSM005750.0071565592IPR006564Zinc finger, PMZ-type
PfamPF044347.8E-5567587IPR007527Zinc finger, SWIM-type
Gene3DG3DSA:3.10.129.101.6E-9733784IPR029069HotDog domain
SuperFamilySSF546378.62E-7735778IPR029069HotDog domain
PfamPF030616.4E-8736778IPR006683Thioesterase domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 784 aa     Download sequence    Send to blast
MTEDGNIEEV EQIIQVENGE KSTPKQKVAQ LKVPYVGMVF DTMEEARNYY EEYGRQEGFW  60
IRTRSSSKTR RRLDEVTSRQ FVCAHEGKYM PKNTSHKASE GNDERDASDI ENMKRTSKNC  120
STVKCGCKAS MRIKLDRWSN KWKVSSFQDS HNHKPVTPER RMKMKSNKVM PKVAKILTET  180
FHEENLPIAK VPSILGGPHI GFNNRDCYNH LRNVRHRQLD GGDAQSVLTY FRKKQAENPQ  240
FFYAIQCDEN GRASNFFWVD ARSRLAYHYF GDVVAFDTTY RTNKYDMPFA PFTGVNHHLQ  300
SIQFGCALLQ DETEVTFLWL FETWLEAMGG RHPVSIITDQ DLAMKGAIAK IFPNTHHRLC  360
LWHIKKKFAE KLSHVYFKKS KFKIHMKKCI RSTYKIEEFE EKWKELMKEY ALDNDDWLNS  420
LYDIRSSWVP VYNRSIFFAG MNTTGRSEGI NSFFDGFITP TTNLREFVVK YDQALKRIMD  480
RESDEDFESE HKYRIVNEGE FLLKHAAKLY TRNVFNKFKD EWSKVNLYKV EEMPCDNEYH  540
AYLVKTKLGE HEEFVVKLNL QTYKGMCECQ NFEFVGILCR HLLKVFVRLD IDTLPDHFIL  600
PRWRQEANKF RIMDFKILVT NDGKEESEAL RLSHMCHQAT KLACIAASSN EAYTTFMEAI  660
KELSKKLSEN STQHATIPSS TTGDPCSTNI DSSQLLLLDP NISQTKGRKK DNISGSKRIK  720
SGIELAQNKK KRNSRVSVDI NVSYLNSAYY GEEVEVEAKV LRVGKAVGVA SVELRKKKTC  780
KIIA
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008219733.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008219733.20.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A251QDD00.0A0A251QDD0_PRUPE; Uncharacterized protein
STRINGXP_008219733.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-142FAR1-related sequence 5