PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008219238.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family GATA
Protein Properties Length: 296aa    MW: 32005.2 Da    PI: 5.8234
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008219238.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.55.9e-16207243135
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C +Cg ++  Tp++Rrgp+g+++LCnaCGl+++ +g+
  XP_008219238.1 207 CKHCGISSksTPMMRRGPSGPRSLCNACGLFWANRGT 243
                     *****99999***********************9997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009792.5E-1272107IPR010399Tify domain
PROSITE profilePS5132014.56972107IPR010399Tify domain
PfamPF062001.0E-1275106IPR010399Tify domain
PfamPF062031.6E-15139181IPR010402CCT domain
PROSITE profilePS5101712.64139181IPR010402CCT domain
SuperFamilySSF577161.09E-11200252No hitNo description
SMARTSM004011.8E-16201254IPR000679Zinc finger, GATA-type
PROSITE profilePS5011410.475201260IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.5E-15205248IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.70E-15206253No hitNo description
PROSITE patternPS003440207234IPR000679Zinc finger, GATA-type
PfamPF003201.0E-13207243IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MYGHSEPMTM PNPIPAGGDD DAAGPGVDSI ENAHIHYEPH TLEDGGVVVA VVDDVSSDPV  60
YDVGSSEMRA QPYDGSSQLT LSFRGQVFVF DAVTPEKVQA VLLLLGGSEL SSGPQGAELA  120
SQNQRGTEDF PIRCSQPHRA ASLSRFRQKR KERCFDKKVR YSVRQEVALR MQRNKGQFSS  180
SKKSDGDYSW GNGQESGQDD SHAETSCKHC GISSKSTPMM RRGPSGPRSL CNACGLFWAN  240
RGTLRELSKR TQDHSVTPAE QGEADTKDLN SVTAIDAHNS LVPFSNGDSS ALVAEQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00451DAPTransfer from AT4G24470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008219238.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008219238.10.0PREDICTED: GATA transcription factor 25
SwissprotQ9LRH66e-92GAT25_ARATH; GATA transcription factor 25
TrEMBLM5XEQ00.0M5XEQ0_PRUPE; Uncharacterized protein
STRINGXP_008219238.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28363368
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.21e-85GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]