PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008218369.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 223aa    MW: 23317.9 Da    PI: 7.055
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008218369.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.53.3e-183685255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                     ++GVr++  +g+WvAeIr+p   + r +r +lg+f t  eAa a+++a++kl+g
  XP_008218369.1 36 NFRGVRQRT-WGKWVAEIREP---N-RgARLWLGTFNTSTEAALAYDEAARKLYG 85
                    69****999.**********8...3.35************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.2E-133585IPR001471AP2/ERF domain
CDDcd000183.60E-293595No hitNo description
Gene3DG3DSA:3.30.730.103.0E-303694IPR001471AP2/ERF domain
SMARTSM003806.6E-373699IPR001471AP2/ERF domain
PROSITE profilePS5103221.4963693IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-203694IPR016177DNA-binding domain
PRINTSPR003672.2E-93748IPR001471AP2/ERF domain
PRINTSPR003672.2E-95975IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MEKEGRKVGK KATGSMGRSR KGCMKGKGGP ENALCNFRGV RQRTWGKWVA EIREPNRGAR  60
LWLGTFNTST EAALAYDEAA RKLYGTSAKL NLPDHKPPSS SPANSSCSST KSTSDQYNMK  120
GGFGESMEGG SSGDGCDKLG GEACSDSLIF AGWSIGDDLW ASTTTGGGAS ASTGTNSPVL  180
SSWAGVCGEK DFLEMNDIGA AVMMGGGDEF INWDALGPPS SWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-173693563ATERF1
3gcc_A1e-173693563ATERF1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00519DAPTransfer from AT5G18450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008218369.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008218369.11e-161PREDICTED: dehydration-responsive element-binding protein 2D
TrEMBLA0A251P0B61e-139A0A251P0B6_PRUPE; Uncharacterized protein
STRINGXP_008218369.11e-160(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25623380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18450.17e-45ERF family protein