PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008218225.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family GeBP
Protein Properties Length: 369aa    MW: 42376.6 Da    PI: 5.1618
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008218225.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57388.21e-27114214397
          DUF573   3 fqrlwseeDeivlLqGlidfkaktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk....aksgkepsfskehdqkifel 91 
                      +r+ws+eDe+ lL+ l+d   ++g+    ++d+  fye vk +++++ ++ q+veK+rrLKkK+++ v+k     ++gke++f+++hd+ +fel
  XP_008218225.1 114 RKRVWSKEDELELLRSLLDDYYSRGQirTTVKDTASFYEEVKPKLKLECNRVQMVEKLRRLKKKYHNVVNKmndmNSTGKEFRFKNPHDKVVFEL 208
                     58*****************9999999877888************************************9998887789***************** PP

          DUF573  92 skkiWg 97 
                     s kiW+
  XP_008218225.1 209 SDKIWN 214
                     *****7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.4E-25115214IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MAWPPLLSWI LSSSSSSSSS SSSEYESDDN NDIEDLGGIN DVPDNVPKSQ NDNIDDHEND  60
DVSYEPQEED QNSNSTSDYT FTVSEPSAKR RRIDRTYEPA LTSEAPEENK KRRRKRVWSK  120
EDELELLRSL LDDYYSRGQI RTTVKDTASF YEEVKPKLKL ECNRVQMVEK LRRLKKKYHN  180
VVNKMNDMNS TGKEFRFKNP HDKVVFELSD KIWNVVDSHE DYAPNSKYVS ICNNVKVKKE  240
EDNVGSSSVA DHERPQKRHA WSHSRLTTTY DENNKAHDVL NDNGTTSSLD INNNNNNVDD  300
NMKKDIPGLI IEGVAMNPLP LSLSKFGSGA DEKWRKQQIL ELEAYSKRLD LVQHQVKAAL  360
DELRSKGVE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18892KRRRI
2108115NKKRRRKR
3109114KKRRRK
4109115KKRRRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008218225.10.0PREDICTED: mediator-associated protein 1-like
TrEMBLM5W5Z00.0M5W5Z0_PRUPE; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32553365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.22e-20DNA-binding storekeeper protein-related transcriptional regulator