PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NP_001287934.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 238aa    MW: 26549.8 Da    PI: 5.0928
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NP_001287934.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.21.8e-1757108155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                     + y+GVr++  + +Wv+e r+p   + k+ r++lg++ tae+Aa+a++ a+++++g
  NP_001287934.1  57 PVYRGVRRRN-NDKWVCEMREP---NkKKSRIWLGTYPTAEMAARAHDVAALAFRG 108
                     68*****887.8******9998...5477************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.6E-1357108IPR001471AP2/ERF domain
PROSITE profilePS5103222.53758116IPR001471AP2/ERF domain
SMARTSM003802.2E-2858122IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-2158118IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.0E-3058118IPR001471AP2/ERF domain
PRINTSPR003671.3E-75970IPR001471AP2/ERF domain
CDDcd000189.94E-2959118No hitNo description
PRINTSPR003671.3E-78298IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MDVSELSDSV DQPESSSLSD ASVTTRGPSL SDGEVILASS RPKKRAGRRV FKETRHPVYR  60
GVRRRNNDKW VCEMREPNKK KSRIWLGTYP TAEMAARAHD VAALAFRGKL ACLNFADSAW  120
RLPVPASMDP MDIRRAAAEA AEGFRPEEFG GVCNGSSDEK ERMVVQVEEE NKKGSVNLER  180
SRSLSLSYWD EEEAFDMPRL LHDMAEGLLL SPPQPLGSDT NLDDMGTDAD IKLWSFSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1445115371Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold or dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapNP_001287934.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX8469080.0JX846908.1 Prunus mume voucher BJFU-1 CBF mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001287934.11e-175dehydration-responsive element-binding protein 1F
SwissprotQ9LN862e-62DRE1F_ARATH; Dehydration-responsive element-binding protein 1F
TrEMBLK7Z1C01e-173K7Z1C0_PRUMU; CBF
STRINGXP_008238787.11e-174(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12610.12e-54ERF family protein
Publications ? help Back to Top
  1. Kazama D,Kurusu T,Mitsuda N,Ohme-Takagi M,Tada Y
    Involvement of elevated proline accumulation in enhanced osmotic stress tolerance in Arabidopsis conferred by chimeric repressor gene silencing technology.
    Plant Signal Behav, 2014. 9(3): p. e28211
    [PMID:24614501]
  2. Kazama D, et al.
    Identification of Chimeric Repressors that Confer Salt and Osmotic Stress Tolerance in Arabidopsis.
    Plants (Basel), 2013. 2(4): p. 769-85
    [PMID:27137403]
  3. Song GQ,Gao X
    Transcriptomic changes reveal gene networks responding to the overexpression of a blueberry DWARF AND DELAYED FLOWERING 1 gene in transgenic blueberry plants.
    BMC Plant Biol., 2017. 17(1): p. 106
    [PMID:28629320]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]