PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00055960-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family C2H2
Protein Properties Length: 379aa    MW: 42403.4 Da    PI: 8.5572
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00055960-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.00078145167223
                       EETTTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                       +C++C++ F++ + L++H ++ H
  PSME_00055960-RA 145 RCKNCSQQFRSFEALQSHHQSnH 167
                       7*****************99888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.683144168IPR007087Zinc finger, C2H2
PROSITE patternPS000280146167IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.90.228.101.6E-13170379IPR012317Poly(ADP-ribose) polymerase, catalytic domain
SuperFamilySSF563991.53E-20171379No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MPTVWLSLRK SLQCRSEDED VHNPESFTVV MAGKKLNSCN SNGFVGNKFI KRMDRFSSHR  60
SRSRDEFMKT FSQELMVIGD YKCQCSAKDA SLLDQNKSNC PCMNNGRNTE RIMPAKCVKQ  120
VLLSPAKFKP GYPSFCNGVD HIRIRCKNCS QQFRSFEALQ SHHQSNHAIT DLSECDLTRR  180
TVERIFKTSW LESGIECTKI ERVIKVNNTQ SKLARFEEYR EAVKCRAGPE EASKHSRCLA  240
DGNEVLRFHG TTIMCSLGTK ESSSLCDKED CNLCKIIRTG FACNGKGIYT TATSGRAHCS  300
INLFNQNAGT KFCGKRAILI CRVIAGRVHG PVDSSDSTSF SSACFDSVAG REDSNCSGLE  360
ELFVFNPRAV LPCFVIVYS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27240.13e-63C2H2 family protein