PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00055892-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family C2H2
Protein Properties Length: 414aa    MW: 45999.7 Da    PI: 8.5998
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00055892-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2171.6e-05184207123
                       EEETTTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                       y Cp+Cg+ +s  + L++H+ t H
  PSME_00055892-RA 184 YACPICGEICSKCEALEQHQATkH 207
                       89******************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280186207IPR007087Zinc finger, C2H2
SuperFamilySSF563995.76E-25209413No hitNo description
Gene3DG3DSA:3.90.228.101.0E-18210413IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MAHAKLFLKG FLAVGVLILQ LLGCLFATAI IATKKRASDQ KVSSWSSIKK FLTCKLDTNE  60
VHDPKKEAKQ SHKKCYHNIG CSGSFYSLRD IVHGNTRVMH RPETSPENSS RSSQEIVVSD  120
HSRVSMGSST RSLPSPKPQF TIHEAQGSFR GVHLRKFSGC YECHVIVDPF EAMSRDASLR  180
TTIYACPICG EICSKCEALE QHQATKHAVS ELAQDDSARN IVDIIFQTSW LKKETPCKIE  240
RVLKIHNSQK TINKFEDYRD MVKAKANKSA KKHPRCIADG NELLRFHCIT FTCSLGMNGL  300
TNLCNLPSCN VCNIIRHGFS SKVENGKGIY TTASSGKAHD SIEVSEEDES NDKRAMLVCR  360
VIAGRVNKSQ DPDECFNGGY DSLAGHAGIY SNLDELFVFN PKAVLPCFVV IYKV
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6781940.0EF678194.1 Picea sitchensis clone WS0282_I08 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010268701.11e-132PREDICTED: uncharacterized protein LOC104605577
TrEMBLB8LQN90.0B8LQN9_PICSI; Uncharacterized protein
STRINGXP_010268701.11e-132(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-107C2H2-like zinc finger protein