PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00053166-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family C2H2
Protein Properties Length: 89aa    MW: 10368 Da    PI: 7.422
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00053166-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.000236682117
                      EEETTTTEEESSHHHHH CS
           zf-C2H2  1 ykCpdCgksFsrksnLk 17
                      + C  C k Fs++s+Lk
  PSME_00053166-RA 66 HNCLECRKIFSTPSSLK 82
                      67*************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.6E-46385IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.6836689IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MERFEQMKGS ETRELAMAFR LLAASILGSG VTSDFLSIPW QDLTMSQIEK MLEETKKMIF  60
LNEKVHNCLE CRKIFSTPSS LKDRQNEHR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1099232e-93BT109923.1 Picea glauca clone GQ03213_N01 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002965828.24e-20zinc finger protein 391
RefseqXP_002983078.24e-20zinc finger protein 26
TrEMBLA0A388JQ168e-23A0A388JQ16_CHABU; Uncharacterized protein