PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00051091-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family C3H
Protein Properties Length: 162aa    MW: 18776.5 Da    PI: 9.2335
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00051091-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.42.5e-0895116426
                       ---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                       e C ++ + G+Ck G +C FaHg
  PSME_00051091-RA  95 ETCVNYKK-GYCKNGLTCEFAHG 116
                       6799****.*************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.104.0E-588116IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.82291118IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-596116IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MAMDISISSP VLSPQCAFCS PSSNGQGIAT WIDDNDAKTF LNTCGTQNQS SDELRMYKFK  60
VVICMRDPGH DWTRCPFAHR GERARKRHPS LYCGETCVNY KKGYCKNGLT CEFAHGWFES  120
WLHPHRYRTK HCKHGVNCNR RVFFLRMEMK KSVFHQHSVP PK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1101261e-130BT110126.1 Picea glauca clone GQ03216_L21 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020596057.13e-35zinc finger CCCH domain-containing protein 35-like
SwissprotQ6L4N41e-33C3H35_ORYSJ; Zinc finger CCCH domain-containing protein 35
TrEMBLA0A2I0X2J88e-33A0A2I0X2J8_9ASPA; Zinc finger CCCH domain-containing protein 2
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25900.24e-35C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]