PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00050982-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family M-type_MADS
Protein Properties Length: 206aa    MW: 23354.5 Da    PI: 8.1938
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00050982-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.33.7e-27959150
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE.EEEEE CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk.lyeys 50
                      krien + rqvtfskRrng+lKKA+ELSvLCdaev ++ifs++gk lye++
  PSME_00050982-RA  9 KRIENATSRQVTFSKRRNGLLKKAYELSVLCDAEVGLMIFSPRGKeLYEFA 59
                      79*****************************************955***98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006627.824162IPR002100Transcription factor, MADS-box
SMARTSM004326.2E-37161IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.41E-26374IPR002100Transcription factor, MADS-box
CDDcd002653.95E-36361No hitNo description
PRINTSPR004043.8E-24323IPR002100Transcription factor, MADS-box
PfamPF003191.9E-241058IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-242338IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-243859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MVRGKTLMKR IENATSRQVT FSKRRNGLLK KAYELSVLCD AEVGLMIFSP RGKELYEFAN  60
PRCSPRYAPS VRDYKPLSRN LRYDEGSFEN PNLQDDNSRE SQVIKHPSLT PRYSKRSGLF  120
TMFLGEPAES QWKNTESMNV ASSLGPLESI HAMGPCFSAC ESMIEGPDVP ELCISFNFAT  180
PMYTRDQMHS FATSTLEFLS SEYSKS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that regulates root development by controlling meristem size and patterning of the root apical meristem. Regulates auxin transport and gradients in the root meristematic cells via direct regulation of the auxin efflux carrier PIN1 and PIN4 gene expression. Binds specifically to the CArG-box DNA sequences in the promoter regions of PIN1 and PIN4 genes (PubMed:24121311). Involved in the regulation of shoot apical meristem (SAM) cell identities and transitions. Promotes flowering transition and participates in flower meristem maintenance and determinacy. Positively regulates TFL1 and WUS expression. Binds directly to the TFL1 regulatory sequences (PubMed:25636918). {ECO:0000269|PubMed:24121311}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:24121311}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ0860871e-102FJ086087.1 Pinus taeda isolate 4783 anonymous locus 0_958_01 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ388383e-30AGL14_ARATH; Agamous-like MADS-box protein AGL14
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11880.11e-32AGAMOUS-like 14
Publications ? help Back to Top
  1. Zimmermann P,Hirsch-Hoffmann M,Hennig L,Gruissem W
    GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox.
    Plant Physiol., 2004. 136(1): p. 2621-32
    [PMID:15375207]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Qu Y, et al.
    Peroxisomal CuAO╬ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]