PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00040473-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family C3H
Protein Properties Length: 1562aa    MW: 171994 Da    PI: 6.9281
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00040473-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.86.9e-07278298425
                       ---SGGGGTS--TTTTT-SS-S CS
           zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                       + C++f r G C++G++C+F H
  PSME_00040473-RA 278 PVCNDFTR-GRCQRGASCRFLH 298
                       67******.************* PP

2zf-CCCH18.43.9e-06475495425
                       ---SGGGGTS--TTTTT-SS-S CS
           zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                       + C+ffar G C+ G++C+F H
  PSME_00040473-RA 475 PTCMFFAR-GCCRNGSSCRFLH 495
                       78******.************* PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.596274301IPR000571Zinc finger, CCCH-type
SMARTSM003560.0043275300IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-4278298IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.5E-5279299IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.69373400IPR000571Zinc finger, CCCH-type
SMARTSM003560.0024373399IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.939471498IPR000571Zinc finger, CCCH-type
SMARTSM003560.0011471497IPR000571Zinc finger, CCCH-type
PfamPF049707.8E-1314141461IPR007053LRAT-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1562 aa     Download sequence    Send to blast
MICWILFQEA AFEVPRVEDV SPARTLQELQ HTLTSEKSNV KNFPNSKEDL PVIPNTVSEI  60
DAFPGNSQEV VLTGSVHKSV GKSMGVDSES EKVILAEKRS ELNFEHDDME SRKIEAVKPC  120
NEGKSFNEGS HSDNRDQNVS LNDNISLEVV HKKPNIMLGQ DNVKSEVQLR LKPDGRAMKT  180
DKYGRLIREG NSDSESDGGL YAARGRTGHT QSRSPSPGHK RWRKRSYSRS PRRKNRWSVS  240
RSRSPKRRRS RSRTPVHDVR RGSDARGERI NRGRGTAPVC NDFTRGRCQR GASCRFLHWE  300
PSGDSGNRWA GGGRGRERMD NREDVAKSVV GKESFLSGEL DKPRSISPDR FLDEHENHYY  360
GERRNHESYG YNDRAATPCY DFSKGRCYRG SSCRYLHSET ADTVGRWSSV GKGRERTENR  420
QDITQPYGGK DGFGAVEVDK TRNISPHRLH NQHYRHNSRE KRSHELDRGN GRSVPTCMFF  480
ARGCCRNGSS CRFLHLDATG NSGSGRGRER PESRSDIPEP FGRKGSSAAG EIDRNKNLFL  540
ERTSYGHDRR DPFKGNRQET DKHNYSSANP VVKTQFSTSG REKLQSHRED LWSQTLSTEI  600
PSQTNRRENV GGDLMPRDLP SQSLSWDKFD APPSEYPSAP SETDKIDPHN PGEGMPEQPL  660
RIHDLQFQTE NLHSKNVLNS TPFESLAGDL PALLDHSVTG HSLSSGQPLG SECFPSQLHD  720
AWKGSSAAHS NLETNVVSLP SGFSTNSSII KPPAEHSGIG GFSMSYNQNS IMPNLNKVPQ  780
DEFVHDSTVQ EVDFCANDVS THVATASTEQ RSVCAQPSLE LVNLQHSSST GQENLIPKLI  840
TMPVFPSQNQ SGGQIGSVPL ALFSEQNAFP FSQTGGPFTP GLPTVNLPSK DVSGLSGFNQ  900
PNKDILAFSA VHQPSKDLHG ISSAKHISGL SAFNLNQPSK DVPGLSAADQ VNLGISVQQN  960
QYEPLCDGIG HSAGAQESLK KDDNTAITQD VKVVLVEPDK TPLLQNVSPN NKDGQSKLSS  1020
PSRTQGIVGN NKHKDSAELS LKGTESHEAI QTDVQVGIAV AVNGSPRREG KSCSPGHLFE  1080
AVTANAGDIA TESATENAGD TGTDQAHPLD ESKKSKEIRM MKLFRSMLAE FVKDVLKPTW  1140
REGQMSKEAF KTIVKKVVDK VAGSLQSHQI PKSQEKIDQF LEASRQKLTK LVQTDPKDMD  1200
LGHILDDVDF KNSKNIRDAV QKAKTKLNQE VVNLLISDPQ RTQDETQAKI DRVLLKVKRL  1260
DEYFFPGERH VDTIEHDTPF ATGHVSLPSG QSETKNETPQ MEHESVDEDQ GHESAAHIQG  1320
WDKDSRFVRS LCEVPGSNNE PYILHQQCED RSVLRYIYYY LVRILSNNGS QGLSAGGGIP  1380
TPNWDAVADL DAAGGVTRVD VVPRIIQQLS AEASNADVEE SDPPETVIHR AMHLLQNGFG  1440
NYDIFENNCE DFAMFCKTGL SVEKRGLGRS GQALSIIGVP VAAILSSPFG LLFGGPGVAT  1500
VMAGLYCLNR YATDIGIRTD VVKAPVEHLE VNLGCSTSSE PSLAESSATQ AISRDISPIN  1560
ST
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1231248RRKNRWSVSRSRSPKRRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1196570.0BT119657.1 Picea glauca clone GQ04108_H04 mRNA sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.19e-16C3H family protein