PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00037407-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HB-other
Protein Properties Length: 474aa    MW: 51692.1 Da    PI: 4.7054
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00037407-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox231.4e-071111383057
                       HHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
          Homeobox  30 reeLAkklgLterqVkvWFqNrRakekk 57 
                       r +L+ +lgL++rq ++WF  rR k+kk
  PSME_00037407-RA 111 RVDLSLQLGLSDRQLQMWFFHRRLKDKK 138
                       789***********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.52E-6110140IPR009057Homeodomain-like
PROSITE profilePS5007110.284111139IPR001356Homeobox domain
PfamPF000464.2E-5111138IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.6E-6112153IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MTTSGYEDNG GCDEFGCNFG GGDFDGGGGG EGGCDDGGVG DGVGVWTGVE GFAGVCCEIW  60
SEEIPASEGV VGRSSWSSVL IGSVTDFDVP ITSPCWSQAG PVTIHFLMAV RVDLSLQLGL  120
SDRQLQMWFF HRRLKDKKEK DKEKEKEKDK EKEKEKEKQP RKEKAKPAPP SAPAHSASLM  180
PTSTKTNFYD DYDARKRPNL KLNSEGGGGW KKKSQVQNLH LHPTSLLQAI ASMEAHLGEP  240
LHDDGPILGV EFDQLPPGAF RSPIGESILG DFSKTLHLSL PEQIRLGLAL ADLDGTNQSQ  300
EGLSKHVPTF LEALSLLQPK ARTSLLLTPL FTNEVNVVNS LRSFESLSTS TGLVFDDILT  360
QLEEETDVAN IMEELGYGCT IDVSHCKYIL SFFSPLKEET VSKIISMVVH THTGLEDAHG  420
THSTFYTSMF NSSITDSSWL SSWNIDVLLD SIKQLVSVLP FTSSQSLYSV SCIY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131138RRLKDKKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44180.12e-15Homeodomain-like transcriptional regulator