PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00036776-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family M-type_MADS
Protein Properties Length: 281aa    MW: 31139.9 Da    PI: 8.2096
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00036776-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.42.9e-21959150
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE.EEEEE CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk.lyeys 50
                      krien + rqvtfsk rn +lKKA+ELSvL daev ++ifs++gk lye++
  PSME_00036776-RA  9 KRIENATSRQVTFSKHRNRLLKKAYELSVLYDAEVGLMIFSPRGKaLYEFA 59
                      79******************************************8799998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.137162IPR002100Transcription factor, MADS-box
SMARTSM004325.8E-28161IPR002100Transcription factor, MADS-box
CDDcd002658.50E-31362No hitNo description
PRINTSPR004041.0E-19323IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.06E-21369IPR002100Transcription factor, MADS-box
PfamPF003192.3E-201058IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-192338IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-193859IPR002100Transcription factor, MADS-box
SuperFamilySSF527777.67E-688274No hitNo description
Gene3DG3DSA:3.30.559.101.6E-494180IPR023213Chloramphenicol acetyltransferase-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MVRGKTLMKR IENATSRQVT FSKHRNRLLK KAYELSVLYD AEVGLMIFSP RGKALYEFAN  60
PSSIALSILE FLICMDSTTM NCLSMIGTGA FFSACKRENT SHAAALASAY LRTAANIKEM  120
KEKKLNQFCF TGVLDCRPHF ETQLPETVLG NYSAGIFQGT RVKDDISFWD MARLISSKTK  180
MEISKHKHFS ELPVLAMLVG QPAESQWKNT ESMNVAGSLG PLASMHAVGP CFSACESMIE  240
GPDGPELCIS FTFATPVYTR DQMHSFATST LELLSSEYSK S
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ0860793e-95FJ086079.2 Pinus taeda isolate 4784 anonymous locus 0_958_01 genomic sequence.
GenBankFJ0860833e-95FJ086083.1 Pinus taeda isolate 4795 anonymous locus 0_958_01 genomic sequence.
GenBankFJ0860843e-95FJ086084.1 Pinus taeda isolate 4788 anonymous locus 0_958_01 genomic sequence.
GenBankFJ0860873e-95FJ086087.1 Pinus taeda isolate 4783 anonymous locus 0_958_01 genomic sequence.
GenBankFJ0860883e-95FJ086088.1 Pinus taeda isolate 4797 anonymous locus 0_958_01 genomic sequence.
GenBankFJ0860893e-95FJ086089.1 Pinus taeda isolate 4792 anonymous locus 0_958_01 genomic sequence.
GenBankFJ0860913e-95FJ086091.1 Pinus taeda isolate 4789 anonymous locus 0_958_01 genomic sequence.
GenBankFJ0860923e-95FJ086092.1 Pinus taeda isolate 4785 anonymous locus 0_958_01 genomic sequence.
GenBankFJ0860933e-95FJ086093.1 Pinus taeda isolate 4790 anonymous locus 0_958_01 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002994738.13e-57uncharacterized protein LOC9652944
TrEMBLD8TGM06e-56D8TGM0_SELML; Uncharacterized protein
STRINGEFJ041951e-56(Selaginella moellendorffii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11880.13e-27AGAMOUS-like 14