PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00036249-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family M-type_MADS
Protein Properties Length: 383aa    MW: 42689.6 Da    PI: 9.2385
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00036249-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF70.12.1e-22127177150
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE.EEEEE CS
            SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk.lyeys 50 
                       kri+n + r+vtfsk rng+lKK +ELSvLCdaev ++ifs++gk lye++
  PSME_00036249-RA 127 KRIKNATSRKVTFSKCRNGLLKKSYELSVLCDAEVGLMIFSPRGKaLYEFA 177
                       79******************************************8799998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.922119180IPR002100Transcription factor, MADS-box
SMARTSM004324.4E-30119179IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.11E-21121188IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-20121141IPR002100Transcription factor, MADS-box
CDDcd002651.73E-30121180No hitNo description
PfamPF003199.5E-21128176IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-20141156IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-20156177IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MKRNANNKFK DGLYHRRSWE ARVVVQAWEQ VVLSLVDCAR SFHLRAAAPS ARLGAKGWPS  60
MLGIEGCREG CSLAPKQAEV PGTFPLPYVY LTYIPLDVYE IQIIYLHVMP MLKRKGRRMV  120
RGKTLMKRIK NATSRKVTFS KCRNGLLKKS YELSVLCDAE VGLMIFSPRG KALYEFANPS  180
SIALSILEFL ICMESTTMNF LSMIGTGAFF SACERENTSH AAALASAYLR IAANIKEMRE  240
KKLNQFCFTG VLDCRPHLET QLPETVLGNY SAGIFQGTRV IKRPSITPRS SKRSGLFTMF  300
LGEPAESQWK NTESLNVAGS LGPLESMHAV GPCFSACESM IEGPDGPELC ISFTFATPVY  360
TRDQMHSFDT STLELMSSEY SKS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ0860871e-109FJ086087.1 Pinus taeda isolate 4783 anonymous locus 0_958_01 genomic sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11880.12e-27AGAMOUS-like 14