PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00034712-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HB-other
Protein Properties Length: 238aa    MW: 26687.8 Da    PI: 9.9473
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00034712-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.13.6e-192381357
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                      k  ++t+eq+++Le+++ ++++p+a +r++L +++    +++ +q+kvWFqNrR +ek+
  PSME_00034712-RA 23 KYVRYTEEQVQALEKFYSECPKPNAFRRQQLIRECpllsNIEPKQIKVWFQNRRCREKQ 81
                      5678*****************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.1751882IPR001356Homeobox domain
SMARTSM003895.3E-152086IPR001356Homeobox domain
SuperFamilySSF466892.69E-172286IPR009057Homeodomain-like
CDDcd000861.51E-152383No hitNo description
PfamPF000469.9E-172381IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.1E-182581IPR009057Homeodomain-like
PfamPF018529.6E-5181236IPR002913START domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MSAEDLMAVA RGKDGKYGFD SGKYVRYTEE QVQALEKFYS ECPKPNAFRR QQLIRECPLL  60
SNIEPKQIKV WFQNRRCREK QRKEATRLLA LNEKLKAMNK VLVKQNDNLS KQAFQFVCQN  120
NFLRRQLKLL KEQSTKLDGS KDALVTTEIS SISRLVSGLR KHRVPQAPQC DVNPAWLLAF  180
AEEALSEFLA KATGTGIDWI QIPGMKPGPD SIGIVAVGHG CDGAAARACS LVGMESSR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
UniProtProbable transcription factor involved in the regulation of vascular development. May promote differentiation of precambial and cambial cells. {ECO:0000269|PubMed:11402194, ECO:0000269|PubMed:15598805}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
UniProtINDUCTION: By auxin. Repressed by miR165. {ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:8575317}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ3919170.0HQ391917.1 Picea glauca class III homeodomain leucine zipper protein (HB6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008791633.12e-93homeobox-leucine zipper protein ATHB-15-like
RefseqXP_029119049.12e-93homeobox-leucine zipper protein ATHB-15 isoform X2
SwissprotQ391234e-86ATHB8_ARATH; Homeobox-leucine zipper protein ATHB-8
SwissprotQ9ZU114e-86ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLE7DX271e-157E7DX27_PICGL; Class III homeodomain leucine zipper protein
STRINGPGSC0003DMT4000749328e-93(Solanum tuberosum)
STRINGXP_008791633.19e-93(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32880.14e-80homeobox gene 8
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Hategan L,Godza B,Kozma-Bognar L,Bishop GJ,Szekeres M
    Differential expression of the brassinosteroid receptor-encoding BRI1 gene in Arabidopsis.
    Planta, 2014. 239(5): p. 989-1001
    [PMID:24488524]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Kakehi J, et al.
    Mutations in ribosomal proteins, RPL4 and RACK1, suppress the phenotype of a thermospermine-deficient mutant of Arabidopsis thaliana.
    PLoS ONE, 2015. 10(1): p. e0117309
    [PMID:25625317]
  5. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  6. Liu S, et al.
    Expression of wild-type PtrIAA14.1, a poplar Aux/IAA gene causes morphological changes in Arabidopsis.
    Front Plant Sci, 2015. 6: p. 388
    [PMID:26082787]
  7. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]
  8. Yamaguchi YL, et al.
    Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots.
    Front Plant Sci, 2017. 8: p. 1195
    [PMID:28747918]
  9. Yamazaki K, et al.
    Suppression of DELLA signaling induces procambial cell formation in culture.
    Plant J., 2018. 94(1): p. 48-59
    [PMID:29383774]