PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00018072-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NF-X1
Protein Properties Length: 423aa    MW: 46436.4 Da    PI: 7.9502
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00018072-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X118.83.6e-06209227120
          zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                       CG H C  lCH+GpCppCp+
  PSME_00018072-RA 209 CG-HECVLLCHPGPCPPCPK 227
                       **.***************96 PP

2zf-NF-X124.55.7e-08261280120
          zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                       CG H+C+++CH GpCppC++
  PSME_00018072-RA 261 CGLHRCEETCHDGPCPPCQK 280
                       ******************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS01359092163IPR019786Zinc finger, PHD-type, conserved site
PfamPF01422160195201IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0043209227IPR000967Zinc finger, NF-X1-type
PfamPF014220.0024209226IPR000967Zinc finger, NF-X1-type
CDDcd060082.97E-10251299No hitNo description
SMARTSM004381.1E-4261280IPR000967Zinc finger, NF-X1-type
PfamPF014221.2E-6261278IPR000967Zinc finger, NF-X1-type
CDDcd060081.95E-9304346No hitNo description
SMARTSM004380.01314333IPR000967Zinc finger, NF-X1-type
PfamPF014220.15316331IPR000967Zinc finger, NF-X1-type
CDDcd060081.08E-7358401No hitNo description
SMARTSM004380.14368388IPR000967Zinc finger, NF-X1-type
PfamPF014220.0068368387IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MESTRSRAPM AWSTNPLTKT RPNTQPTNDP ELPKYESDSD TSLEEDPKGN DQNLDESIFS  60
EYMSIHGKSS AAVNLSKIKN LLAASKIGAI SCLICLEKVR SIDPIWDCKV GCHAIFHLIC  120
IQEWARQASN SAAERSMARL SRDQFPLAAS AALENSLWHC PKCRVDYPQS QIPRQYKCFC  180
GKLDDPPNDP WITPHTCGEI CGKPLQRNCG HECVLLCHPG PCPPCPKLVK SRCFCGAVSD  240
VRRCGLKDFS CNRSCQRPLA CGLHRCEETC HDGPCPPCQK TGVYSCLCGK VDKECLCSQS  300
GFRCENPCER ELSCKKHKCM KGCHAGPCGE CELQGRRTCP CGKVECNGLS CDAAVPTCGS  360
TCEKMLQCSL HRCPERCHSG PCVETCRIVT TKSCRCGSLK KQAMLCPYGR RDAAHASIAS  420
NSP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0854880.0EF085488.1 Picea sitchensis clone WS02717_C21 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010253736.11e-157PREDICTED: NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK81e-132NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLF6HCC41e-150F6HCC4_VITVI; Putative uncharacterized protein
STRINGVIT_13s0067g00920.t011e-149(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.11e-125sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors