PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00017701-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family M-type_MADS
Protein Properties Length: 322aa    MW: 36113.4 Da    PI: 9.6471
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00017701-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF58.39.6e-19943135
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EE CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaev 35
                      krien + rqvtfskRrn +lKKA+ELSvLCda++
  PSME_00017701-RA  9 KRIENATSRQVTFSKRRNRLLKKAYELSVLCDAKA 43
                      79******************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-19160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.516142IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.92E-17143IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-15323IPR002100Transcription factor, MADS-box
PfamPF003191.6E-161042IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-152338IPR002100Transcription factor, MADS-box
TIGRFAMsTIGR007281.3E-46135305IPR004813Oligopeptide transporter, OPT superfamily
PfamPF031694.1E-28135304IPR004813Oligopeptide transporter, OPT superfamily
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055085Biological Processtransmembrane transport
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MVRGKTLMKR IENATSRQVT FSKRRNRLLK KAYELSVLCD AKAQPRRVRG PNLAHQLTPS  60
SLVFRPDAVL MLLRKAYKDN HLGHLCRSAP VADYSSLFGG EFKLSEEDAS DISSLNILDI  120
AALEEALLHI LYACASQLVG TIVAGTINLC ISWWMPTGIE NICDVDSLPP DSPWMCPKDR  180
VAFDASVIWG LVGPKHLFGP LGPYKSLVWL FLVGALLPGI VCILSKLFHK AEWLKLINIP  240
VILGGFSSMP PATPVNIGTW IIIGTIFNYF IFRLRRWWWQ RYNYVLSASM DAGTTFMGVL  300
LYFSLGSENK GLKWWGTKID QP
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in the translocation of tetra- and pentapeptides across the cellular membrane in an energy-dependent manner. Acts also as a metal transporter that could be a component of the copper transport machinery. Essential for early embryo development. {ECO:0000269|PubMed:11788749, ECO:0000269|PubMed:12417702, ECO:0000269|PubMed:13129917}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Highly induced by iron, copper and manganese deficiencies. {ECO:0000269|PubMed:13129917}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ0605101e-118FJ060510.2 Pinus taeda isolate 1581 anonymous locus 0_16808_01 genomic sequence.
GenBankFJ0605131e-118FJ060513.2 Pinus taeda isolate 1592 anonymous locus 0_16808_01 genomic sequence.
GenBankFJ0605141e-118FJ060514.2 Pinus taeda isolate 1598 anonymous locus 0_16808_01 genomic sequence.
GenBankFJ0605151e-118FJ060515.2 Pinus taeda isolate 1584 anonymous locus 0_16808_01 genomic sequence.
GenBankFJ0605171e-118FJ060517.2 Pinus taeda isolate 1596 anonymous locus 0_16808_01 genomic sequence.
GenBankFJ0605201e-118FJ060520.2 Pinus taeda isolate 1587 anonymous locus 0_16808_01 genomic sequence.
GenBankFJ0605211e-118FJ060521.2 Pinus taeda isolate 1590 anonymous locus 0_16808_01 genomic sequence.
GenBankFJ0605221e-118FJ060522.2 Pinus taeda isolate 1589 anonymous locus 0_16808_01 genomic sequence.
GenBankFJ0605251e-118FJ060525.2 Pinus taeda isolate 1582 anonymous locus 0_16808_01 genomic sequence.
GenBankJQ2621631e-118JQ262163.1 Pinus radiata isolate 13474 hypothetical protein (0_16808_01) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003635158.14e-88PREDICTED: oligopeptide transporter 3
RefseqXP_021621313.13e-85oligopeptide transporter 3
RefseqXP_021623543.18e-86oligopeptide transporter 3-like
SwissprotO234821e-77OPT3_ARATH; Oligopeptide transporter 3
TrEMBLA0A2C9VE401e-85A0A2C9VE40_MANES; Uncharacterized protein
TrEMBLF6GYZ98e-87F6GYZ9_VITVI; Uncharacterized protein
STRINGVIT_00s0259g00140.t011e-87(Vitis vinifera)
STRINGcassava4.1_002314m1e-84(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.12e-18AGAMOUS-like 20
Publications ? help Back to Top
  1. Koh S, et al.
    An oligopeptide transporter gene family in Arabidopsis.
    Plant Physiol., 2002. 128(1): p. 21-9
    [PMID:11788749]
  2. Stacey MG,Koh S,Becker J,Stacey G
    AtOPT3, a member of the oligopeptide transporter family, is essential for embryo development in Arabidopsis.
    Plant Cell, 2002. 14(11): p. 2799-811
    [PMID:12417702]
  3. Wintz H, et al.
    Expression profiles of Arabidopsis thaliana in mineral deficiencies reveal novel transporters involved in metal homeostasis.
    J. Biol. Chem., 2003. 278(48): p. 47644-53
    [PMID:13129917]
  4. Stacey MG,Osawa H,Patel A,Gassmann W,Stacey G
    Expression analyses of Arabidopsis oligopeptide transporters during seed germination, vegetative growth and reproduction.
    Planta, 2006. 223(2): p. 291-305
    [PMID:16151844]
  5. Sugiura M,Georgescu MN,Takahashi M
    A nitrite transporter associated with nitrite uptake by higher plant chloroplasts.
    Plant Cell Physiol., 2007. 48(7): p. 1022-35
    [PMID:17566055]
  6. Stacey MG, et al.
    The Arabidopsis AtOPT3 protein functions in metal homeostasis and movement of iron to developing seeds.
    Plant Physiol., 2008. 146(2): p. 589-601
    [PMID:18083798]
  7. Zhai Z, et al.
    OPT3 Is a Phloem-Specific Iron Transporter That Is Essential for Systemic Iron Signaling and Redistribution of Iron and Cadmium in Arabidopsis.
    Plant Cell, 2014. 26(5): p. 2249-2264
    [PMID:24867923]
  8. Mendoza-Cózatl DG, et al.
    OPT3 is a component of the iron-signaling network between leaves and roots and misregulation of OPT3 leads to an over-accumulation of cadmium in seeds.
    Mol Plant, 2014. 7(9): p. 1455-1469
    [PMID:24880337]
  9. Khan MA, et al.
    Changes in iron availability in Arabidopsis are rapidly sensed in the leaf vasculature and impaired sensing leads to opposite transcriptional programs in leaves and roots.
    Plant Cell Environ., 2018. 41(10): p. 2263-2276
    [PMID:29520929]
  10. Steiner HY, et al.
    An Arabidopsis peptide transporter is a member of a new class of membrane transport proteins.
    Plant Cell, 1994. 6(9): p. 1289-99
    [PMID:7919993]
  11. Rentsch D,Hirner B,Schmelzer E,Frommer WB
    Salt stress-induced proline transporters and salt stress-repressed broad specificity amino acid permeases identified by suppression of a yeast amino acid permease-targeting mutant.
    Plant Cell, 1996. 8(8): p. 1437-46
    [PMID:8776904]