PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00016506-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family M-type_MADS
Protein Properties Length: 219aa    MW: 24373 Da    PI: 5.8381
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00016506-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.13.5e-26959150
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE.EEEEE CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk.lyeys 50
                      krien + r+vtfskRrng+lKKA+ELSvLCdaev ++ifs++gk lye++
  PSME_00016506-RA  9 KRIENAMSRKVTFSKRRNGLLKKAYELSVLCDAEVGLMIFSPRGKvLYEFA 59
                      79******************************************9569997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-33161IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.75E-24165IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.731162IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-23323IPR002100Transcription factor, MADS-box
CDDcd002652.84E-34372No hitNo description
PfamPF003197.9E-241058IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-232338IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-233859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MVRGKNLMKR IENAMSRKVT FSKRRNGLLK KAYELSVLCD AEVGLMIFSP RGKVLYEFAN  60
PRALAYDYLQ FSPSYPFVSK IRAWFALLLV DAQDGIMDVF GIEVDFCDAA NSDNEVIKRP  120
SITPSSSKRS GLFTMFLGEP AESQWKNTEY LNVAGSLGPL ASMHAVGPCF SACESMIEGP  180
DGPELCISFT FFTPVYTIDQ MHSFSTSTLE LLSSEYSKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ0860871e-109FJ086087.1 Pinus taeda isolate 4783 anonymous locus 0_958_01 genomic sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.14e-28AGAMOUS-like 20