PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00010923-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family C3H
Protein Properties Length: 547aa    MW: 61424.7 Da    PI: 9.1683
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00010923-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.63.2e-11500523226
                       -S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                        +e+Cr+f++ G C +GdrCkF+H+
  PSME_00010923-RA 500 QREPCRYFLK-GRCTFGDRCKFSHV 523
                       58********.*************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF689065.31E-8124169No hitNo description
Gene3DG3DSA:1.10.720.308.4E-10124168IPR003034SAP domain
SMARTSM005135.6E-6134168IPR003034SAP domain
PROSITE profilePS5080010.066134168IPR003034SAP domain
PfamPF020371.3E-10134168IPR003034SAP domain
Gene3DG3DSA:4.10.1000.105.8E-8494522IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.319498525IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-7499524IPR000571Zinc finger, CCCH-type
PfamPF006429.5E-9500523IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.61E-6501522IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MMMMMMFESG NPPTSSMHAS MREGYRSKAG PRVRTSRRPI GSTASSAMEA LDPRVDDQSD  60
SDSEDAHLNS HSDSEEEEDQ GEDPSFELPQ GQVSDDDESS DGVLEDPDVQ TSALNNKDEK  120
TYLEVEKLIE GGKLEKLKVD QCKLYLRKHG LRVTGRKSVL LERIQEHLKI KDGSGEEKYP  180
KSSFVLDCKG DACTGDIVMF EQNVYDMYNV AARSSGGPSI GTRTVAGRII KESYGAAKQQ  240
HTFTVRAKAM AKIEVLWSKG EKPLLPLRSL LIKGRNLYRL KTQRQPWPNE EDRRKSLQEK  300
HDRGSLARQM RDMRIQNKEV GRQVEIAQLP RHVNTRKQKE SVSVSSKVVH NDSDKKSSQS  360
VQRYDVTSLP MHELNIGNNI QKQLPVQNQG SLTFMNHGVH KGIGLLQNKG NGLLQNGNKN  420
QSASAACNYA GNSLTYSNNI PSDAGTSGTN YGLFSTSGNG LIGHTRPMSG FSDMRLPAQH  480
TRPQHTLSQH TGRPQHSLSQ REPCRYFLKG RCTFGDRCKF SHVVNYNYDL NCQMVRNKEN  540
YQTHRYD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1124818e-42BT112481.1 Picea glauca clone GQ03315_P04 mRNA sequence.