PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00009357-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HB-other
Protein Properties Length: 446aa    MW: 50970.6 Da    PI: 8.0864
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00009357-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox309.1e-1046901457
                      HHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
          Homeobox 14 eLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                      eL++  ++   ++  + r++L+ +lgL++rq ++WF+ rR k+kk
  PSME_00009357-RA 46 ELQQKHRNtIEKVMPSVRADLSLQLGLSDRQLQMWFCHRRLKDKK 90
                      66666666567777889**************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003890.00143295IPR001356Homeobox domain
PfamPF000462.8E-74690IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.8E-84690IPR009057Homeodomain-like
SuperFamilySSF466895.13E-76192IPR009057Homeodomain-like
CDDcd000865.48E-46385No hitNo description
PROSITE profilePS5007110.5766391IPR001356Homeobox domain
PfamPF084363.6E-20237284IPR0136441-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal
SuperFamilySSF553477.85E-31237319No hitNo description
PfamPF132889.6E-28316431IPR026877DXP reductoisomerase C-terminal domain
SuperFamilySSF690551.11E-21349438IPR026877DXP reductoisomerase C-terminal domain
Gene3DG3DSA:1.10.1740.101.4E-19362436No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
TTFRRDEVLE SWKSRWWFFG KRRIFDGKGV RASTKASVDH QLKVSELQQK HRNTIEKVMP  60
SVRADLSLQL GLSDRQLQMW FCHRRLKDKK EKEKEKEKEK EKQPKKEKAK HAPPPAPAHS  120
AYLMPTSTKT NFYDDYDARK RPTLKLNFEE GGGWKKKSQV QNLHLHPTSL LQAIATVEAH  180
LGEPLRDDGP ILGVEFDQLP PGAFGSRIAN PKVDFFEAGG FFDDFECLLT IQLRKGDWPM  240
EKLKEVKFVD ALKHPNWNMG KKITVESTTL FNKGLEVIEA HYLYGVDYDN IEIMIHPQLI  300
IHSMVVTQDS SILAQLGLPD MQLPILYTMS CPERISCSEI TWPRLDLCKL GSLSFKAPDC  360
VKYPSIDLSY SAGRAGGTMT GVLSAANEKA VEISYLDIFK IVEMTCEKHK NELLHQPSLE  420
EIIHYDQWAK NYAASLEKSI LEPVTV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4y6p_A2e-432374362104151-deoxy-D-xylulose 5-phosphate reductoisomerase, apicoplast
4y6p_B2e-432374362104151-deoxy-D-xylulose 5-phosphate reductoisomerase, apicoplast
4y6r_A2e-432374362104151-deoxy-D-xylulose 5-phosphate reductoisomerase, apicoplast
4y6r_B2e-432374362104151-deoxy-D-xylulose 5-phosphate reductoisomerase, apicoplast
4y6s_A2e-432374362104151-deoxy-D-xylulose 5-phosphate reductoisomerase, apicoplast
4y6s_B2e-432374362104151-deoxy-D-xylulose 5-phosphate reductoisomerase, apicoplast
5jaz_A2e-432374362104151-deoxy-D-xylulose 5-phosphate reductoisomerase, apicoplastic
5jaz_B2e-432374362104151-deoxy-D-xylulose 5-phosphate reductoisomerase, apicoplastic
5jbi_A2e-432374362104151-deoxy-D-xylulose 5-phosphate reductoisomerase, apicoplastic
5jbi_B2e-432374362104151-deoxy-D-xylulose 5-phosphate reductoisomerase, apicoplastic
5jc1_A2e-432374362104151-deoxy-D-xylulose 5-phosphate reductoisomerase, apicoplastic
5jc1_B2e-432374362104151-deoxy-D-xylulose 5-phosphate reductoisomerase, apicoplastic
5jmp_A2e-432374362104151-deoxy-D-xylulose 5-phosphate reductoisomerase, apicoplastic
5jmp_B2e-432374362104151-deoxy-D-xylulose 5-phosphate reductoisomerase, apicoplastic
5jmw_A2e-432374362104151-deoxy-D-xylulose 5-phosphate reductoisomerase, apicoplastic
5jmw_B2e-432374362104151-deoxy-D-xylulose 5-phosphate reductoisomerase, apicoplastic
5jnl_A2e-432374362104151-deoxy-D-xylulose 5-phosphate reductoisomerase, apicoplastic
5jnl_B2e-432374362104151-deoxy-D-xylulose 5-phosphate reductoisomerase, apicoplastic
5jo0_A2e-432374362104151-deoxy-D-xylulose 5-phosphate reductoisomerase, apicoplastic
5jo0_B2e-432374362104151-deoxy-D-xylulose 5-phosphate reductoisomerase, apicoplastic
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18390RRLKDKKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0710870.0BT071087.1 Picea sitchensis clone WS02770_C07 unknown mRNA.
GenBankBT1074410.0BT107441.1 Picea glauca clone GQ03107_I22 mRNA sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44180.28e-20Homeodomain-like transcriptional regulator