PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00008383-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family C2H2
Protein Properties Length: 1899aa    MW: 209170 Da    PI: 7.2521
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00008383-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.0002917961821123
                        EEET..TTTEEESSHHHHHHHHHH.T CS
           zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt.H 23  
                        y+C    C++ F++k +L+ H r+ +
  PSME_00008383-RA 1796 YQCDteGCTMNFTTKQDLQLHKRNtC 1821
                        99********************9877 PP

2zf-C2H210.70.001718201843223
                        EET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2    2 kCp..dCgksFsrksnLkrHirtH 23  
                        +Cp   Cgk+F ++ +L +H r+H
  PSME_00008383-RA 1820 TCPikGCGKHFISHKYLLHHRRVH 1843
                        69999*****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005452.7E-135091IPR003349JmjN domain
PROSITE profilePS5118314.165192IPR003349JmjN domain
PfamPF023754.3E-145285IPR003349JmjN domain
PROSITE profilePS5118433.569264439IPR003347JmjC domain
SuperFamilySSF511972.47E-26267435No hitNo description
SMARTSM005582.9E-42270439IPR003347JmjC domain
PfamPF023735.5E-35303421IPR003347JmjC domain
Gene3DG3DSA:3.30.160.606.6E-417881818IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003551517961818IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.19618191848IPR007087Zinc finger, C2H2
SMARTSM003550.02618191843IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.0E-418201842IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028018211843IPR007087Zinc finger, C2H2
SuperFamilySSF576678.84E-718351870No hitNo description
Gene3DG3DSA:3.30.160.605.1E-618431869IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003557218491871IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1899 aa     Download sequence    Send to blast
MMRSTSSEYD CRRSWRGNDG VVDSFYCNPA GRVHKMGDGE VLPWLKALPL APEYRPTEAE  60
FADPIAYILK IEKEACQYGI CKIIPPIPKA PKKVVIANLN RCLGKLQSNN NSSSDTVAVA  120
AGAPLNVNGS NAYTEFCKGT NVAKFTTRQQ QIGWSPKKAR GGPLQTVVQK SVWESGDTYT  180
LEQFEAKAKM FARSRLKSSR DVAPLVAETL FWRATADKPF TVEYANDIPG TAFGEPDEKF  240
LSASTAPQQR KMQSQRKRKQ KEGSQNSCLD LSNTAWNMRI ASRSHGSLLR YMPDEVPGVT  300
SPMVYIAMLF SWFAWHVEDH DLHSLNYLHM GASKTWYAVP GDAAPAFEEV IRRDGYGGHV  360
NPIVALGMLA EKTTVMSPEV LIAAGVPCCR LVQNAGEFVV TFPRAYHLGF SHGFNCGEAA  420
NLATPDWLKV AKEAAVRRAA MEYLPMLSHQ QLLYFLAMDF NSRIPEDVAS QPRSHRLKYR  480
QKGEGEMVLK RSFVNDVIEN NQLLSILLQK SSTRHAIVWN SANVSCDLPS SPLCFSTPET  540
KYNATSSDVS RLKVLALQSD TLVNVSTAPG RNEDMFIESS SKIVEDASIT AGIGVSLSNN  600
DKNKNLLFYN NSRFPSSCTD NIHIQRQAFK RGTSSTNMDR DSGSLACIAC GVLGFASMVV  660
IQPCQEAARK LLPSYNKLDQ KYLETFGTGS VSCDVACGGI TATYSQSPII DEKMGMDIEN  720
VQLDNHGAAL ASTAKIMAYT NLSDEEGHKH NLVDFPNLSI MKNNLATDLC MNNLSNDIMA  780
SWQLRAKENN AVVCSTNAFV TCEDNACEGH SKYLSSAICL ENSPGTYNEK HTHAYGVVAE  840
NINSVDIGHS ESKKWKESPN LSTLNDANMP NSFSVCSASE MPQVSSLDLL AVTYGDSVDS  900
DEDDDASQAA KKDFLCGLPN SARTCENGHK LSGIADATGT DVCAQCLSGH LSSSTLVAKI  960
KTEETHDDPI SAGTESEYRS SFLYTGPKDS LNISMGKNKD NMGEMSNNTP NQSPKRNITC  1020
HTYVADCQKS SHEELNVCET QISVILERNQ KQKGILTPPV SEDSKDLTGS INYSTGENEC  1080
KLVSTEACAN KSILEGKVVS TSFTTPSEVL GSEVGKSDID AHRFSEAFPA SDHHSGILVR  1140
LGDELKESNV SDKGNTYYLS VRKNKTQTCH LAGNTMGGFT KTDSLKGNIE DTPIESTNAA  1200
SLWKPSKGFL RPQVFCLQHA IEIEQQLQSI GGAHMLLLCH SNYPSIEKKA RSLASEIGNN  1260
YLWKDIPLRD AATEDLEVIH SAIDDEGGYE LASTDWTVCL DMSLHHSINL SKSPLYSKQI  1320
PYNPVLNALF FSSSLDNCSP NSAYGSERQY DSTKQRKKSK HKKITVAGKW CGRVWMVHPY  1380
LASDKFQPSA SFGTIKTRKL EDEVSQEQGH PWKHMIEEAD CKPIVKPKST MIPDEQILMP  1440
LLGAPDAMTP DEQISIPLSG GPDAMISDEQ ISKPLLGGPD IEQVSSANLR AIAEESSACQ  1500
EGGQPQQYTT VQNTDYKPEL EKRTTFSRNE HCLITYTKNT QKVSVSRKLT MKRKFHSGQT  1560
FDINKKVKLL ECTTLDSDGR TPLPSSPINV QGDSMMVSDE GFSAYSKGEL AAKPTASCLA  1620
GEKPKHKVVD KDYAQDKADH TQEKMVEVDI EIQYTHGTNA QNKGCISQWT RNRNLLDSCD  1680
TLEKKETKCS VRSKRNIGLK DGNKVHSAEG SHVSTSENTV VSKSQIVSQN SSPTGELEGG  1740
PSTRLRSRSL RDRVEVVSKV AEKALLPQPA STKKISRGQK KTKTAPSKNA DKKNGYQCDT  1800
EGCTMNFTTK QDLQLHKRNT CPIKGCGKHF ISHKYLLHHR RVHLDDRPLT CPWKGCGKTF  1860
KWAWARTEHS PQAENWPSKA IKELPDKIFQ ELFVSCLIC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A6e-75425356435Transcription factor jumonji (Jmj) family protein
6ip4_A6e-75425356435Arabidopsis JMJ13
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1254259QRKRKQ
217431752RLRSRSLRDR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1198171e-40BT119817.1 Picea glauca clone GQ04110_I02 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006852278.10.0lysine-specific demethylase REF6
RefseqXP_020527617.10.0lysine-specific demethylase REF6
TrEMBLW1Q0V70.0W1Q0V7_AMBTC; Uncharacterized protein
STRINGERN137450.0(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.11e-146relative of early flowering 6