PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00004875-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family C2H2
Protein Properties Length: 239aa    MW: 27162.4 Da    PI: 4.1836
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00004875-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.33.1e-065072123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ykC  Cg+sF  +++L  H+++H
  PSME_00004875-RA 50 YKCRFCGQSFAKSYELGGHMNRH 72
                      9*********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.6E-64878No hitNo description
PROSITE profilePS5015712.3835077IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.4E-55076IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002805272IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009965Biological Processleaf morphogenesis
GO:0010094Biological Processspecification of carpel identity
GO:0010097Biological Processspecification of stamen identity
GO:0010158Biological Processabaxial cell fate specification
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MEFWLTRDNE DGTSENEVNF IEETEDPHSQ MQQHSEPERA GEDEDPNLMY KCRFCGQSFA  60
KSYELGGHMN RHRREKEVEN ARQAHQLLEE LGLCRPSFFP TPDFPSVNFI SRALSSVSSN  120
ITEMQTHAQS NFYHTPPLNW NLETSQNTGM LYEQHQIFTS DPANTSQFWP SLGAQGMQVN  180
YFQQQDGEST SVAAESNFSQ DFQSPSSYPL QSEFAGQVSE ELQQLSLSSS IPIPAEQAS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05120.14e-09C2H2 family protein