PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00003774-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family C3H
Protein Properties Length: 774aa    MW: 87164.1 Da    PI: 6.6236
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00003774-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.96.3e-0789110325
                       S---SGGGGTS--TTTTT-SS-S CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                       +++C +f++ G+C  Gd+C F+H
  PSME_00003774-RA  89 RVPCYYFFQ-GYCAKGDQCLFMH 110
                       79*******.************* PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.4691039IPR000571Zinc finger, CCCH-type
PfamPF156633.8E-131165No hitNo description
SMARTSM003560.0021138IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.4654167IPR000571Zinc finger, CCCH-type
SMARTSM003562.64366IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.6886113IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-686110IPR000571Zinc finger, CCCH-type
SMARTSM003560.02287112IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-489110IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 774 aa     Download sequence    Send to blast
RSAAMDEEAQ KRNTDCVYFL ASPLTCKKGN ECEYRHSESA RINPRHCWYW LSGNCLNPHC  60
AFRHPPLEGH PSTSGTEPLP ASGSSNKSRV PCYYFFQGYC AKGDQCLFMH FPPFGGNQAV  120
PTSQKTTKVT GTGAEPQSVE KKASNGADNG TVKPTSIQST SSEVQLLTEA KHVAEAGPLP  180
SHAKSAQHAP ERSLPEVDFS PLNMLDAPAN ELNFVTRSPV HEVQPTDDWL DNDMESEEWL  240
EESSPGFDVL VDDGPDQLGY QEEAEYLSNF DMEQGQELTH GRESLIPMTD EMLQFDYESM  300
HDDLGYTEGG SQYAHRSYDP YEEHRHSSYD HVNWHKRKTF DGRVSEGKVM SERRGLSLER  360
YSRQSEKPDL RHRLGKIRRV DRVQIDDKSK RRLQSDSRSG DFQHGHRQRG NEQRYHHDAI  420
TRRQHVTRHN KMRVHSRMPS GSGGLPRGSF HEVELNCEGT TEKVHWRSLS GRHDSSEHIR  480
SRHKEKERGR IYADVAAPSE SSVFRKPSTR NETGKNATDF AKPKTLEQIK EEKRKIALLG  540
NGPRVCDNSE ESKTSPLSGQ HGSQAAVPKS RIQPPSLCGE ERKISFSKVI VHESSKLPTF  600
EGPKPLSAIL KAKQKPTNDD IVEGTHAQGA GELRKQSELI RNPRIPETDE KTLVLSSSAE  660
KEFEKRRFSQ GAKHMYESAT LTSINPSSHV STDFHQGNSL LQNNGKPVMR QNNGDLTMNG  720
AISSHVDKDD TCLEPLKIEN GRTTGEYKSE PDEDEEYLED EEDDFAKKLG GFFS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1051811e-143BT105181.1 Picea glauca clone GQ02819_H10 mRNA sequence.