PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00002844-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HB-other
Protein Properties Length: 343aa    MW: 38774 Da    PI: 10.1283
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00002844-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox15.23.6e-0567123157
                       TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
          Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                       rr+R  ++++ ++ L+  F+ + ++ ++e +e+++ +g t +qV+ +F  +R + ++
  PSME_00002844-RA  67 RRPRDLLNPKAVKCLQGIFAIKDTIMKREAREISALCGATITQVREFFSGQRSRVRR 123
                       899**************************************************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500718.98964124IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.2E-566135IPR009057Homeodomain-like
SMARTSM003890.005266128IPR001356Homeobox domain
SuperFamilySSF466892.01E-666132IPR009057Homeodomain-like
CDDcd000860.001267123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009911Biological Processpositive regulation of flower development
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MLKDGTAEGS RVLRFPRAGA RKHGGVVAGP DGVAERAHAP PDRGVAEDRG LTMPAYWHKS  60
TLARNGRRPR DLLNPKAVKC LQGIFAIKDT IMKREAREIS ALCGATITQV REFFSGQRSR  120
VRRFVRQSMD KENNMQMSIT FEDSDQNSTK QSSCLTDMLH SESEVGNKVA AKDSYKLPND  180
DILGERESFD SNFIKSFFFL MRKESTFSGQ VQLLERILQI HDQAVLCRFV TKGGIPILAK  240
WLTLASVEEQ TTVLQVLFKV LFHLPLHKAL PVQMSTVLQT VNKLRFYRTS GISFLKHLLC  300
DLRFLCTKFD SFLSSSWGLL CTFIELLQLN KVVYLLSIFS CKS
Functional Description ? help Back to Top
Source Description
UniProtSeems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269|PubMed:10363371}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011627478.19e-70homeobox protein LUMINIDEPENDENS isoform X1
SwissprotQ387964e-61LUMI_ARATH; Homeobox protein LUMINIDEPENDENS
TrEMBLA0A1D6N2698e-69A0A1D6N269_MAIZE; Luminidependens protein1
TrEMBLU5D6D62e-68U5D6D6_AMBTC; Uncharacterized protein
STRINGERN169823e-69(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02560.21e-54HB-other family protein
Publications ? help Back to Top
  1. Chakrabortee S, et al.
    Luminidependens (LD) is an Arabidopsis protein with prion behavior.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(21): p. 6065-70
    [PMID:27114519]