PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00001974-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family C3H
Protein Properties Length: 352aa    MW: 39311.2 Da    PI: 7.898
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00001974-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.15.4e-07928827
                      GGGGTS--TTTTT-SS-SSS CS
           zf-CCCH  8 ffartGtCkyGdrCkFaHgp 27
                      ++ +t +Ck+G +CkF+H++
  PSME_00001974-RA  9 HHVKTRQCKFGITCKFHHPQ 28
                      6779**************97 PP

2zf-CCCH25.22.9e-08335351319
                       S---SGGGGTS--TTTT CS
           zf-CCCH   3 telCrffartGtCkyGd 19 
                       +++C+f++rtG+CkyG+
  PSME_00001974-RA 335 QPECQFYMRTGYCKYGS 351
                       799*************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501038.061229IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-4928IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.61332352IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-5335351IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MDNEKEFSHH VKTRQCKFGI TCKFHHPQPV GESITIHGPS SYYPISPSLS IPSPQPYARG  60
ITTWPVSRTP LMTNPHLHSP STYVHLVISQ GMMSVPSWNP FPAQVGSITS RDVGQQAPGT  120
GLFYGPRYQT DEMNHTMQGA LSSYSSRSAS MGILSSNTQM EHTFPERHGQ PECQFYMRTG  180
YYKYGSTSSR DRTIPLTSCA LNPLGLPLRS DNKSLVSLVN FTIHSQLEDQ LQFLDLLHVI  240
QLALLCQYPV LNHIQDNNMT SFKDATNAQV GSITSHDVGQ QAPGTGLFYG LRYQTGEMNH  300
SMQGALSSYS SRYSSMGLPS SNTQMEHMFP ERHGQPECQF YMRTGYCKYG ST
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1043381e-177BT104338.1 Picea glauca clone GQ02809_C21 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0C9S6461e-63A0A0C9S646_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_15578_2223 transcribed RNA sequence
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.19e-28zinc finger protein 1