PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf15691g00004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family FAR1
Protein Properties Length: 565aa    MW: 63664.1 Da    PI: 7.5478
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf15691g00004.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR138.15.2e-1271138290
                      FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 
                               fY+eYAk++GF +r+ + ++        k +f C k g r+   ++              C+a+l+v+ + ++kw+vtk ++eHn
  Peinf101Scf15691g00004.1  71 FYDEYAKRMGFPTRVYQYNRV-------KTDFLCDKDGLRKVFGES--------------CDAMLRVEFKGQNKWVVTKYVKEHN 134
                               9***************98887.......678********9998777..............************************* PP

                      FAR1  87 Hela 90 
                               H+l+
  Peinf101Scf15691g00004.1 135 HSLV 138
                               **97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.0E-871138IPR004330FAR1 DNA binding domain
PfamPF044342.5E-9282320IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096611.066286322IPR007527Zinc finger, SWIM-type
SMARTSM005751.8E-6297324IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 565 aa     Download sequence    Send to blast
WFTCSGMDVE VINVEEGNMH QQGGISDDGD DEPSESGEAN VIGRSNAPDR DEVVEPRMGM  60
VFHSEDRAKI FYDEYAKRMG FPTRVYQYNR VKTDFLCDKD GLRKVFGESC DAMLRVEFKG  120
QNKWVVTKYV KEHNHSLVSP NKVHYQRPHR HLAVTKKNVP ENNPGVGIVP SGVMYVSVDG  180
NRIPVDINRG AKHTRPTESD QAYERALENS FEKEIEADFN TMCTSPQLRT PSPMEKQAAT  240
LYTKKIFLKF QEELVETFVY TANRIDGDST LSTFRVAKFE DDQKAYIVSL HISELKANCS  300
CQMFECSGIL CRHILTVFTV TNVLTLPSHY ILKRWTINAK CGAEIDEHVL RHDTESMAQR  360
YNSLCREAIR FAEEGSVAQE TYNAALGALK EGGKKVGLAK RNVAKVSPPS SQVSGVGYDN  420
RRTSTSASEM TPLLWPRQDE MTKRLNLNDS GIPARTVADS NAQRMAPVSL HRDDAHTDNT  480
ISQVKVILPC LKSMTWVMEN KTSTPANRVA VINLKLQDYN KTPSRESEVK FQLSRVTLEP  540
MLKSMAYISE QLSTPANRVA VINLK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755180.0HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009776133.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 3 isoform X3
SwissprotQ9ZVC91e-159FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBLA0A200Q0800.0A0A200Q080_9MAGN; FAR1 DNA binding domain
STRINGXP_009776131.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43522109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.21e-147FAR1-related sequence 3
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]