PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf11273g00014.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family NF-YA
Protein Properties Length: 334aa    MW: 37026.5 Da    PI: 7.7417
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf11273g00014.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA39.41.9e-122202413758
                 CBFB_NFYA  37 pylheSRhkhAlrRpRgsgGrF 58 
                               pylheSRh+hAl+R+Rg+gGrF
  Peinf101Scf11273g00014.1 220 PYLHESRHRHALNRARGPGGRF 241
                               8********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5115214.707170244IPR001289Nuclear transcription factor Y subunit A
SMARTSM005211.4E-5187244IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.5E-10202241IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
VLQAASVFKQ GHSMVRRTQD FLRKDSELNS IPTAPSVSVS AHLGSPVDLQ MQQFSTSSSP  60
QNSKHLDVHF RDQDSSSTQS TGQSCPEVSS EGERNIHGKS KMPLQAATNV FFLRFSLLPF  120
LTSTFYNLIL SISVRPSPGN FKSTVKPEVS QSVSSQEHDW TSNMSQKNIA CIPFPHPDPY  180
YHGLVAAYGK QTMVQSQMLG TVSARMPLPL DLQQDEPIFP YLHESRHRHA LNRARGPGGR  240
FLNIKKLRES KSPDLIDDQH VPVSNELQLN TKMLEPDVYQ STPASSGITS CSNGDAIYHQ  300
QSLKYSAFSL HIRGALEQDK GENDLSTNPC LPSF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4897610.0AM489761.1 Petunia x hybrida partial mRNA for YA6 (nf-YA gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006342951.11e-100PREDICTED: nuclear transcription factor Y subunit A-3-like
TrEMBLM0ZR715e-98M0ZR71_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000063581e-97(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA139661114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.13e-19nuclear factor Y, subunit A3