PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf08365g00008.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family FAR1
Protein Properties Length: 450aa    MW: 50303.8 Da    PI: 8.7758
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf08365g00008.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR138.53.7e-1271138290
                      FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 
                               fY+eYAk++GF +r+ + ++        k +f C k g r+   ++              C+a+l+v+ + ++kw+vtk ++eHn
  Peinf101Scf08365g00008.1  71 FYDEYAKRMGFPTRVYQYNRV-------KTDFLCDKDGLRKVFGES--------------CDAMLRVEFKGQNKWVVTKYVKEHN 134
                               9***************98887.......678********9998777..............************************* PP

                      FAR1  87 Hela 90 
                               H+l+
  Peinf101Scf08365g00008.1 135 HSLV 138
                               **97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.4E-871138IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
WFTCSGMDVE VINVEEGNMH QQGGISDDGD DEPSESGEAN VIGRSNAPDR DEVVEPRMGM  60
VFHSEDRAKI FYDEYAKRMG FPTRVYQYNR VKTDFLCDKD GLRKVFGESC DAMLRVEFKG  120
QNKWVVTKYV KEHNHSLVSP NKVHYQRPHR HLAVTKKNVP ENNPGVGIVP SGVMYVSVDG  180
NRIPVDINRG AKHTRPTEEA IRFAEEGSVA QETYNAALGA LKEGGKKVGL AKRNVAKVSP  240
PSSQVSGVGY DNRRTSTSAS EMTPLLWPRQ DEMTKRLNLN DSGIPARTVA DSNAQRMAPV  300
SLHRDDAHTD NTISQVKVIL PCLKSMTWVM ENKTSTPANR VAVINLKLQD YNKTPSRESE  360
VKFQLSRVTL EPMLKSMAYI SEQLSTPANR VAVINLKLQD TETTSGESEV KFQVSRDTLA  420
AMLRSMAYIR EQLSSTVDSQ LENPAKKQRK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754451e-159HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBankHG9755181e-159HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009609281.11e-151PREDICTED: protein FAR1-RELATED SEQUENCE 3 isoform X3
RefseqXP_009776133.11e-151PREDICTED: protein FAR1-RELATED SEQUENCE 3 isoform X3
RefseqXP_019240041.11e-151PREDICTED: protein FAR1-RELATED SEQUENCE 3
RefseqXP_019240042.11e-151PREDICTED: protein FAR1-RELATED SEQUENCE 3
SwissprotQ9ZVC91e-101FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBLA0A1U7WBW61e-150A0A1U7WBW6_NICSY; protein FAR1-RELATED SEQUENCE 3 isoform X3
TrEMBLA0A1U7WFV11e-149A0A1U7WFV1_NICSY; protein FAR1-RELATED SEQUENCE 3 isoform X1
STRINGXP_009776131.11e-150(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43522109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.21e-101FAR1-related sequence 3
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]