PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf08365g00008.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

FAR1

Protein Properties

Length: 450aa MW: 50303.8 Da PI: 8.7758

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf08365g00008.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	38.5	3.7e-12	71	138	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 fY+eYAk++GF +r+ + ++ k +f C k g r+ ++ C+a+l+v+ + ++kw+vtk ++eHn Peinf101Scf08365g00008.1 71 FYDEYAKRMGFPTRVYQYNRV-------KTDFLCDKDGLRKVFGES--------------CDAMLRVEFKGQNKWVVTKYVKEHN 134 9*************98887.......678****9998777..............********************* PP FAR1 87 Hela 90 H+l+ Peinf101Scf08365g00008.1 135 HSLV 138 97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.4E-8	71	138	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 450 aa Download sequence Send to blast
WFTCSGMDVE VINVEEGNMH QQGGISDDGD DEPSESGEAN VIGRSNAPDR DEVVEPRMGM 60 VFHSEDRAKI FYDEYAKRMG FPTRVYQYNR VKTDFLCDKD GLRKVFGESC DAMLRVEFKG 120 QNKWVVTKYV KEHNHSLVSP NKVHYQRPHR HLAVTKKNVP ENNPGVGIVP SGVMYVSVDG 180 NRIPVDINRG AKHTRPTEEA IRFAEEGSVA QETYNAALGA LKEGGKKVGL AKRNVAKVSP 240 PSSQVSGVGY DNRRTSTSAS EMTPLLWPRQ DEMTKRLNLN DSGIPARTVA DSNAQRMAPV 300 SLHRDDAHTD NTISQVKVIL PCLKSMTWVM ENKTSTPANR VAVINLKLQD YNKTPSRESE 360 VKFQLSRVTL EPMLKSMAYI SEQLSTPANR VAVINLKLQD TETTSGESEV KFQVSRDTLA 420 AMLRSMAYIR EQLSSTVDSQ LENPAKKQRK

Sequence ? help Back to Top

Protein Sequence Length: 450 aa Download sequence Send to blast

WFTCSGMDVE VINVEEGNMH QQGGISDDGD DEPSESGEAN VIGRSNAPDR DEVVEPRMGM  60
VFHSEDRAKI FYDEYAKRMG FPTRVYQYNR VKTDFLCDKD GLRKVFGESC DAMLRVEFKG  120
QNKWVVTKYV KEHNHSLVSP NKVHYQRPHR HLAVTKKNVP ENNPGVGIVP SGVMYVSVDG  180
NRIPVDINRG AKHTRPTEEA IRFAEEGSVA QETYNAALGA LKEGGKKVGL AKRNVAKVSP  240
PSSQVSGVGY DNRRTSTSAS EMTPLLWPRQ DEMTKRLNLN DSGIPARTVA DSNAQRMAPV  300
SLHRDDAHTD NTISQVKVIL PCLKSMTWVM ENKTSTPANR VAVINLKLQD YNKTPSRESE  360
VKFQLSRVTL EPMLKSMAYI SEQLSTPANR VAVINLKLQD TETTSGESEV KFQVSRDTLA  420
AMLRSMAYIR EQLSSTVDSQ LENPAKKQRK

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	1e-159	HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBank	HG975518	1e-159	HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009609281.1	1e-151	PREDICTED: protein FAR1-RELATED SEQUENCE 3 isoform X3
Refseq	XP_009776133.1	1e-151	PREDICTED: protein FAR1-RELATED SEQUENCE 3 isoform X3
Refseq	XP_019240041.1	1e-151	PREDICTED: protein FAR1-RELATED SEQUENCE 3
Refseq	XP_019240042.1	1e-151	PREDICTED: protein FAR1-RELATED SEQUENCE 3
Swissprot	Q9ZVC9	1e-101	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	A0A1U7WBW6	1e-150	A0A1U7WBW6_NICSY; protein FAR1-RELATED SEQUENCE 3 isoform X3
TrEMBL	A0A1U7WFV1	1e-149	A0A1U7WFV1_NICSY; protein FAR1-RELATED SEQUENCE 3 isoform X1
STRING	XP_009776131.1	1e-150	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA435	22	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	1e-101	FAR1-related sequence 3

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]