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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
Previous version:
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v4.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf08365g00008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | FAR1 | ||||||||
Protein Properties | Length: 450aa MW: 50303.8 Da PI: 8.7758 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 38.5 | 3.7e-12 | 71 | 138 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 fY+eYAk++GF +r+ + ++ k +f C k g r+ ++ C+a+l+v+ + ++kw+vtk ++eHn Peinf101Scf08365g00008.1 71 FYDEYAKRMGFPTRVYQYNRV-------KTDFLCDKDGLRKVFGES--------------CDAMLRVEFKGQNKWVVTKYVKEHN 134 9***************98887.......678********9998777..............************************* PP FAR1 87 Hela 90 H+l+ Peinf101Scf08365g00008.1 135 HSLV 138 **97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.4E-8 | 71 | 138 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 450 aa Download sequence Send to blast |
WFTCSGMDVE VINVEEGNMH QQGGISDDGD DEPSESGEAN VIGRSNAPDR DEVVEPRMGM 60 VFHSEDRAKI FYDEYAKRMG FPTRVYQYNR VKTDFLCDKD GLRKVFGESC DAMLRVEFKG 120 QNKWVVTKYV KEHNHSLVSP NKVHYQRPHR HLAVTKKNVP ENNPGVGIVP SGVMYVSVDG 180 NRIPVDINRG AKHTRPTEEA IRFAEEGSVA QETYNAALGA LKEGGKKVGL AKRNVAKVSP 240 PSSQVSGVGY DNRRTSTSAS EMTPLLWPRQ DEMTKRLNLN DSGIPARTVA DSNAQRMAPV 300 SLHRDDAHTD NTISQVKVIL PCLKSMTWVM ENKTSTPANR VAVINLKLQD YNKTPSRESE 360 VKFQLSRVTL EPMLKSMAYI SEQLSTPANR VAVINLKLQD TETTSGESEV KFQVSRDTLA 420 AMLRSMAYIR EQLSSTVDSQ LENPAKKQRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 1e-159 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. | |||
GenBank | HG975518 | 1e-159 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009609281.1 | 1e-151 | PREDICTED: protein FAR1-RELATED SEQUENCE 3 isoform X3 | ||||
Refseq | XP_009776133.1 | 1e-151 | PREDICTED: protein FAR1-RELATED SEQUENCE 3 isoform X3 | ||||
Refseq | XP_019240041.1 | 1e-151 | PREDICTED: protein FAR1-RELATED SEQUENCE 3 | ||||
Refseq | XP_019240042.1 | 1e-151 | PREDICTED: protein FAR1-RELATED SEQUENCE 3 | ||||
Swissprot | Q9ZVC9 | 1e-101 | FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3 | ||||
TrEMBL | A0A1U7WBW6 | 1e-150 | A0A1U7WBW6_NICSY; protein FAR1-RELATED SEQUENCE 3 isoform X3 | ||||
TrEMBL | A0A1U7WFV1 | 1e-149 | A0A1U7WFV1_NICSY; protein FAR1-RELATED SEQUENCE 3 isoform X1 | ||||
STRING | XP_009776131.1 | 1e-150 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA435 | 22 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27110.2 | 1e-101 | FAR1-related sequence 3 |
Publications ? help Back to Top | |||
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