PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf05410g01024.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family ERF
Protein Properties Length: 198aa    MW: 22227.2 Da    PI: 8.8113
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf05410g01024.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.71.2e-174494155
                       AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                              + y+GVr++  + +Wv+e+r+p+e   +kr++lg++ tae+Aa+a++ a+++l+g
  Peinf101Scf05410g01024.1 44 PVYRGVRRRN-NDKWVCELREPRE---QKRIWLGSYPTAEMAARAHDVAALALRG 94
                              68*****887.8*********965...4*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.6E-124494IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-2045104IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.7E-2945104IPR001471AP2/ERF domain
SMARTSM003802.4E-2645108IPR001471AP2/ERF domain
PROSITE profilePS5103222.2645102IPR001471AP2/ERF domain
CDDcd000189.37E-2846104No hitNo description
PRINTSPR003674.2E-74657IPR001471AP2/ERF domain
PRINTSPR003674.2E-76884IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MSNSTTSCFS TKAPLVHEEE ATLLASTKPK KRAGRKKFKE TRHPVYRGVR RRNNDKWVCE  60
LREPREQKRI WLGSYPTAEM AARAHDVAAL ALRGQDATLN FEDSAWLLTV PVSKDPKDLR  120
RAALKAAEAF GPREAAVVTA SRVENNVTNG GVIANNEEMK VVPEDQNTMY NNNCMQNVMA  180
TENVLYDNMD IEGVVLTY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-14431011271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold or dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009777001.12e-77PREDICTED: uncharacterized protein LOC104226669
RefseqXP_016432509.18e-80PREDICTED: dehydration-responsive element-binding protein 1F-like
SwissprotQ9SGJ64e-54DRE1E_ARATH; Dehydration-responsive element-binding protein 1E
TrEMBLA0A1S3WY252e-78A0A1S3WY25_TOBAC; dehydration-responsive element-binding protein 1F-like
TrEMBLA0A1U7WIB75e-76A0A1U7WIB7_NICSY; uncharacterized protein LOC104226669
STRINGXP_009777001.19e-77(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26324183
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63030.24e-37ERF family protein