PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf04218g01004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family ERF
Protein Properties Length: 364aa    MW: 40173 Da    PI: 6.1042
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf04218g01004.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.35.1e-20186235255
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                y+GVr+++ +g+WvAeIr p++   r+r +lg+f taeeAa a+++a+ kl+g
  Peinf101Scf04218g01004.1 186 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFETAEEAALAYDKAAYKLRG 235
                               59******9.**********965...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.49E-33185245No hitNo description
Gene3DG3DSA:3.30.730.104.0E-32186244IPR001471AP2/ERF domain
PROSITE profilePS5103223.077186243IPR001471AP2/ERF domain
SMARTSM003802.4E-37186249IPR001471AP2/ERF domain
SuperFamilySSF541715.43E-23186244IPR016177DNA-binding domain
PfamPF008471.3E-13187235IPR001471AP2/ERF domain
PRINTSPR003674.7E-11187198IPR001471AP2/ERF domain
PRINTSPR003674.7E-11209225IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MATTMDFWTS TLLELDSSSN SMKSGGELMD ALEPFIKSAS PNNYPPISPS FNSFPSSNIQ  60
SFPIMSSLSP STSYPYDSFL STPQPNMSYN DCSTSTTSLN PNFLHGVSGF EVEQPSSNIG  120
LNMLTQVQID QIQAQICLQN NQQQQMMSAA TFQDPWIHKH TQHASFLGPK PVSMKQSGSP  180
PKPPKLYRGV RQRHWGKWVA EIRLPKNRTR LWLGTFETAE EAALAYDKAA YKLRGDFARL  240
NFPHLRHNGS LIGGEFGEYK PLQSSVDAKL QAICQDLAQG KSIDAKKKRK VSKKVEEVES  300
KTIEAGSESD GSGSGLASGS GGSSPISDLT FAEFAEEDIT TWDMCSENFM LQKFPSHEID  360
WASL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-22185243160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1285290KKKRKV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009615540.11e-173PREDICTED: ethylene-responsive transcription factor RAP2-4-like
TrEMBLA0A1S4CIB71e-171A0A1S4CIB7_TOBAC; ethylene-responsive transcription factor RAP2-4-like isoform X1
STRINGXP_009615540.11e-173(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16102471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.15e-55related to AP2 4