PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf04208g01029.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family ERF
Protein Properties Length: 244aa    MW: 25973.3 Da    PI: 6.6312
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf04208g01029.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2513.6e-16102150255
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                ++G+r  +++g+Wv+eIr+p++   ++r++lg++ t+e+Aa+a++ a+++l+g
  Peinf101Scf04208g01029.1 102 VFRGIR--SRSGKWVSEIREPRK---TTRIWLGTYPTPEMAAAAYDVAALALKG 150
                               589996..678*********843...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.6E-27102166IPR001471AP2/ERF domain
PROSITE profilePS5103219.941102158IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-25102158IPR001471AP2/ERF domain
CDDcd000181.31E-15103158No hitNo description
SuperFamilySSF541711.63E-17103159IPR016177DNA-binding domain
PfamPF008472.4E-9104150IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MADPVHDLTK SSQPPQPSDQ SSITPFNCPI PPPLPPPLLQ THIQTTTVAH PTHHEGEISP  60
RPLSNISSPR TVQLPNIPIA TTMSSTSSGG SPSRPTGGKH HVFRGIRSRS GKWVSEIREP  120
RKTTRIWLGT YPTPEMAAAA YDVAALALKG NDAVINFPGN LSSYPSLPPS PSAADIRKAA  180
ATAAALMKPE TGETTVGTQL EALFDMPNLL VDMAEAMMVS PPRMNSQPSD DSPGNSDAES  240
LWSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1493158572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016508571.14e-75PREDICTED: ethylene-responsive transcription factor ERF027-like
SwissprotQ9FJ902e-45ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A1S4D5B39e-74A0A1S4D5B3_TOBAC; ethylene-responsive transcription factor ERF027-like
STRINGPGSC0003DMT4000585876e-74(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55322110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.17e-36ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]