PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf03731g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MYB_related
Protein Properties Length: 92aa    MW: 10637 Da    PI: 9.4527
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf03731g00003.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.82.5e-08347345
                              SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
           Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                              +WT+   +++ +a + + ++   + + Iar++g g+++++++ ++ 
  Peinf101Scf03731g00003.1  3 SWTARQIKKFEEALAIYDNDtpdRSHNIARCVG-GKSAEEVRRHYE 47
                              6*******************8888889******.**********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.557154IPR017884SANT domain
SMARTSM007171.9E-5152IPR001005SANT/Myb domain
SuperFamilySSF466897.28E-11357IPR009057Homeodomain-like
CDDcd001672.86E-7350No hitNo description
Gene3DG3DSA:1.10.10.604.9E-5356IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MASWTARQIK KFEEALAIYD NDTPDRSHNI ARCVGGKSAE EVRRHYELLV KDIMQIENGQ  60
IPLPNYRSTE RNSTGYANQQ KYHKSLFPAK PN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-264721179RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019244969.11e-45PREDICTED: protein RADIALIS-like 3
SwissprotQ1A1731e-29RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A2G2ZSA14e-46A0A2G2ZSA1_CAPAN; Protein RADIALIS-like 6
TrEMBLA0A2G3AX883e-46A0A2G3AX88_CAPCH; Protein RADIALIS-like 6
STRINGXP_009771192.11e-44(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.14e-32RAD-like 6