PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf03731g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MYB_related
Protein Properties Length: 92aa    MW: 10736.1 Da    PI: 9.9491
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf03731g00001.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.16.4e-11347345
                              SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
           Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                              +WT+   +++++a + + ++   +W+ Iar++g g+++++++ ++ 
  Peinf101Scf03731g00001.1  3 SWTARQNKKFKEALAIYDNDtpdRWHNIARCVG-GKSAEEVRRHYE 47
                              6********************************.**********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.7E-7152IPR001005SANT/Myb domain
PROSITE profilePS5129312.1154IPR017884SANT domain
Gene3DG3DSA:1.10.10.603.9E-5356IPR009057Homeodomain-like
SuperFamilySSF466899.72E-13357IPR009057Homeodomain-like
CDDcd001671.60E-8350No hitNo description
PfamPF002493.9E-8347IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MASWTARQNK KFKEALAIYD NDTPDRWHNI ARCVGGKSAE EVRRHYELLV KDIMQIENGQ  60
IPLPNYRSTE RNSTGYANQQ KYHKSLFPAK PN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-284721179RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019244969.16e-48PREDICTED: protein RADIALIS-like 3
SwissprotQ1A1733e-32RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A2G3AX881e-49A0A2G3AX88_CAPCH; Protein RADIALIS-like 6
STRINGXP_009771192.17e-47(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.19e-35RAD-like 6