PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf02974g04008.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family TCP
Protein Properties Length: 411aa    MW: 43678 Da    PI: 8.5456
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf02974g04008.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP130.12.2e-401012073111
                       TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnss 86 
                               ++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++  ++s +ss+ + s
  Peinf101Scf02974g04008.1 101 VAKKPSKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNVSLRSSGTTIS 185
                               6799****************************************************************99977777777776333 PP

                       TCP  87 sgkaaksaakskksqksaasalnla 111
                               ++   +s+  + + +  a+++l ++
  Peinf101Scf02974g04008.1 186 AP---PSKSAPLFLHGGATAMLGFH 207
                               33...22223333333333333333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136928.705106160IPR017887Transcription factor TCP subgroup
PfamPF036346.8E-38106216IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MEPHRKKQGG GSSSNSGSEQ HHQHHQHAQQ QHNQETPSSL QLVSLNHQSQ PNDPPTPGSN  60
QPHPHGPFMG GSMQSRTNTT TLLSPSSTTT PNTTTTLSTK VAKKPSKDRH TKVDGRGRRI  120
RMPALCAARV FQLTRELGHK SDGETIEWLL QQAEPAIIAA TGTGTIPANF STLNVSLRSS  180
GTTISAPPSK SAPLFLHGGA TAMLGFHHQL TNPGFGQDPD ENYMKKRFRE DTSGATSPSP  240
DKPERTGVEG TEPGSESIKP GSSQPSSYIP APAMWAVAAP GGGNVGNAFW MLPVSGGSGS  300
ATASVGVAQP DQQFWQYKAG SAMQRIGGFE FAGGSRFNPV QLGSMVPVQQ LGLGVSETNM  360
GILSSMNAYN NNSGNNRIDL GMNLEQHQNH HHHSQTQGSD SGDENHKDSQ S
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00614PBMTransfer from AT1G35560Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009775051.10.0PREDICTED: transcription factor TCP23-like
SwissprotQ9LQF05e-74TCP23_ARATH; Transcription factor TCP23
TrEMBLA0A0V0I6U91e-180A0A0V0I6U9_SOLCH; Putative transcription factor TCP8-like
STRINGPGSC0003DMT4000239811e-173(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24824201
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35560.12e-63TCP family protein