PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf02543g01017.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family WOX
Protein Properties Length: 201aa    MW: 23209.4 Da    PI: 9.6009
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf02543g01017.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.92.7e-211069357
                              --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                  Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                              +R+++tkeq++ Le+l+++  r+psae++++++++l    +++ ++V++WFqN++a++++
  Peinf101Scf02543g01017.1 10 SRWNPTKEQIDLLENLYKQgIRTPSAEQIQQITMRLkafgHIEGKNVFYWFQNHKARQRQ 69
                              7*****************99**************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.884570IPR001356Homeobox domain
SMARTSM003895.1E-6774IPR001356Homeobox domain
SuperFamilySSF466892.48E-13778IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.1E-91069IPR009057Homeodomain-like
PfamPF000465.7E-191069IPR001356Homeobox domain
CDDcd000861.03E-61171No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009942Biological Processlongitudinal axis specification
GO:0010654Biological Processapical cell fate commitment
GO:0048825Biological Processcotyledon development
GO:0080167Biological Processresponse to karrikin
GO:0090451Biological Processcotyledon boundary formation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MNDNMSPAGS RWNPTKEQID LLENLYKQGI RTPSAEQIQQ ITMRLKAFGH IEGKNVFYWF  60
QNHKARQRQK QKQDHIAYNF NRFLHRTCVF PPPCPKVVCS PYYAPQSDLG FYQQCSVPRI  120
ILRGPGVFIR RRAACDAPAV YVGTNDANDH CQETSGMVEH LSPNAKQYNS NINQETLNLF  180
PLHPTGVLQE RTSTTRHKLF F
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in embryonic patterning. Required for apical embryo development after fertilization. Its specific localization to the apical daughter cell of the zygote, while WOX8 is confined to the basal cell, suggests that the asymmetric division of the plant zygote separates determinants of apical and basal cell fates. {ECO:0000269|PubMed:14711878}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016453563.12e-92PREDICTED: WUSCHEL-related homeobox 2-like
SwissprotQ6X7K18e-48WOX2_ARATH; WUSCHEL-related homeobox 2
TrEMBLA0A1S3YN926e-91A0A1S3YN92_TOBAC; WUSCHEL-related homeobox 2-like
STRINGXP_009758504.12e-91(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA114141925
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59340.17e-43WUSCHEL related homeobox 2
Publications ? help Back to Top
  1. Liang Z,Brown RC,Fletcher JC,Opsahl-Sorteberg HG
    Calpain-Mediated Positional Information Directs Cell Wall Orientation to Sustain Plant Stem Cell Activity, Growth and Development.
    Plant Cell Physiol., 2015. 56(9): p. 1855-66
    [PMID:26220906]
  2. Zhu T,Moschou PN,Alvarez JM,Sohlberg JJ,von Arnold S
    WUSCHEL-RELATED HOMEOBOX 2 is important for protoderm and suspensor development in the gymnosperm Norway spruce.
    BMC Plant Biol., 2016. 16: p. 19
    [PMID:26786587]
  3. Zhang Z,Tucker E,Hermann M,Laux T
    A Molecular Framework for the Embryonic Initiation of Shoot Meristem Stem Cells.
    Dev. Cell, 2017. 40(3): p. 264-277.e4
    [PMID:28171749]