PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf02481g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family ZF-HD
Protein Properties Length: 371aa    MW: 40583.9 Da    PI: 8.2476
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf02481g00001.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer112.12.9e-3567124460
               ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreveee 60 
                               v YkeClkNhAaslGghavDGCgEfmps++++ +++++lkCaACgCHRnFHRre+e++
  Peinf101Scf02481g00001.1  67 VLYKECLKNHAASLGGHAVDGCGEFMPSPSANaTDPTSLKCAACGCHRNFHRREPEDQ 124
                               78****************************9999********************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.8E-2967121IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015665.5E-3269120IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.48969120IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-2269123IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466893.46E-18228296IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-29229297IPR009057Homeodomain-like
TIGRFAMsTIGR015652.5E-25235292IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MDITNNNHNT STTTTHVTKT TEAETHETQT PIRIQPVKPI SFSNGVLKRH NSLQHQHQLH  60
HHHPVVVLYK ECLKNHAASL GGHAVDGCGE FMPSPSANAT DPTSLKCAAC GCHRNFHRRE  120
PEDQVLVNHN TTAALEYQPL HRHHPPPPPP PQLALPPHHH HGGAHSTGSP INSPSSPPPI  180
SSAYYPASAP HMLLALSTGG GLSAPPPPPP DSNNINNLNQ NLISPVQFSS NPNSRKRFRT  240
KFTQNQKERM LEFAERIGWK IQKRDEDVIN EFCRNIGVEK GVLKVWMHNN KNTFGKKSDA  300
VNSNSNVAAT VIHNINHNIN VNTSNGNGFG HMDPTTTAVE FHLHHESSTD KNDDSVSAHN  360
VVGTNGSSSS S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A7e-222342931675ZF-HD homeobox family protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009620291.11e-112PREDICTED: zinc-finger homeodomain protein 9-like
TrEMBLA0A1S4B4C91e-109A0A1S4B4C9_TOBAC; zinc-finger homeodomain protein 9-like
STRINGXP_009620291.11e-111(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10882485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15210.11e-34homeobox protein 30