PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf02382g04035.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family WRKY
Protein Properties Length: 294aa    MW: 33143 Da    PI: 6.8601
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf02382g04035.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.82.6e-29142200259
                               --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                               +D+++WrKYGqK++kgs++prsYY+C+s+ gC ++k+ve+s ++p ++ +tY+ eHnh+
  Peinf101Scf02382g04035.1 142 SDKWCWRKYGQKPIKGSPYPRSYYKCSSSkGCLARKQVEQSFTEPGIFLVTYTAEHNHS 200
                               79*************************998****************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.7E-30127202IPR003657WRKY domain
PROSITE profilePS5081131.238136202IPR003657WRKY domain
SuperFamilySSF1182903.01E-25138202IPR003657WRKY domain
SMARTSM007742.1E-34141201IPR003657WRKY domain
PfamPF031061.1E-23143199IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MSQLCAGLES DNWCLQAVVR GSSTSNFQQD FDPKSCFSLL DMSTIDHHFA LSDHQTTAVL  60
SDELEQLYKP FYPIDRQASV TSSISSPNKE VKEEPRKFVQ LEEPKESNFV VTVAASYVPK  120
YKKRKNEQKR VVHQVKADDL SSDKWCWRKY GQKPIKGSPY PRSYYKCSSS KGCLARKQVE  180
QSFTEPGIFL VTYTAEHNHS QPTRRNSLAG IIRNKFPTSS PSSPKTAKSQ VSIATHGSTS  240
DSVECPNIKI KQEIKDEYNI VIEGSDESEF ADMFGEDFYS GLEDLTEFKS SLGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-181392021577Probable WRKY transcription factor 4
2lex_A5e-181392021577Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00448DAPTransfer from AT4G23550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009764282.14e-97PREDICTED: probable WRKY transcription factor 29
RefseqXP_016483102.14e-97PREDICTED: probable WRKY transcription factor 29
TrEMBLA0A1S4B2E59e-96A0A1S4B2E5_TOBAC; probable WRKY transcription factor 29
TrEMBLA0A1U7V8129e-96A0A1U7V812_NICSY; probable WRKY transcription factor 29
STRINGXP_009764282.12e-96(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57812335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23550.19e-52WRKY family protein