PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf02312g04015.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family ERF
Protein Properties Length: 178aa    MW: 19249.5 Da    PI: 4.5716
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf02312g04015.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.31.2e-152451056
                       AP2 10 kkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                              +++g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+++++ge
  Peinf101Scf02312g04015.1  2 RSWGKWVSEIREPKK---KSRIWLGTYPTAEMAARAHDVAALSIKGE 45
                              57**********854...6************************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.2E-26153IPR001471AP2/ERF domain
SMARTSM003801.9E-29158IPR001471AP2/ERF domain
PROSITE profilePS5103220.231152IPR001471AP2/ERF domain
CDDcd000185.89E-29154No hitNo description
SuperFamilySSF541711.31E-17253IPR016177DNA-binding domain
PfamPF008477.7E-10245IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MRSWGKWVSE IREPKKKSRI WLGTYPTAEM AARAHDVAAL SIKGESAILN FPNLVGSLPR  60
PVSNLPRDVQ AAAAKAATMN LDLVTVTSSS SSSSSSSSSS SSSSSSLKTI TSGSEELGEI  120
IELPSLEESF EPNEMRLSDS VEGLLYSPWW ASSDSEFCGY FLEQSLIPSS FETLKWAC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-152532173Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009799693.16e-79PREDICTED: ethylene-responsive transcription factor TINY-like
RefseqXP_016493944.16e-79PREDICTED: ethylene-responsive transcription factor TINY-like
SwissprotQ9LYD37e-49DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A1S4BYT81e-77A0A1S4BYT8_TOBAC; ethylene-responsive transcription factor TINY-like
TrEMBLA0A1U7Y9A71e-77A0A1U7Y9A7_NICSY; ethylene-responsive transcription factor TINY-like
STRINGXP_009799693.12e-78(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.19e-49ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,B├╝low L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]