PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf02210g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family ERF
Protein Properties Length: 219aa    MW: 24797.8 Da    PI: 6.8894
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf02210g00002.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.11.9e-173887356
                       AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                              y+G+r ++ +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+ +++g+
  Peinf101Scf02210g00002.1 38 YRGIRKRS-WGKWVSEIREPRK---KSRIWLGTFKTAEMAARAHDVAAFAIKGH 87
                              9****888.**********843...6***********************99986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.0513794IPR001471AP2/ERF domain
SMARTSM003805.9E-3737100IPR001471AP2/ERF domain
SuperFamilySSF541715.75E-213795IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-313795IPR001471AP2/ERF domain
PfamPF008472.6E-113887IPR001471AP2/ERF domain
CDDcd000182.84E-313896No hitNo description
PRINTSPR003676.0E-113849IPR001471AP2/ERF domain
PRINTSPR003676.0E-116076IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MQEPKDNVQE NQQASDSDNN NKTKKKTKKT DDTRHHTYRG IRKRSWGKWV SEIREPRKKS  60
RIWLGTFKTA EMAARAHDVA AFAIKGHSAF LNFPELVHQL PRPATKCRKD IQAAAAKAAA  120
LDDHEAEPSL AKLIEPFCME ESRTSTTKLS SSSSSDSLLP LHIIKEPFLD LPDLFLDLSK  180
QVDEFYYNSS LELTAAESNY SESWPEDLVL WDYSSGAAI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1935941272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015084630.26e-60ethylene-responsive transcription factor ERF038
RefseqXP_028077791.11e-59ethylene-responsive transcription factor ERF038-like
SwissprotQ8LBQ77e-48ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A2R6QNQ12e-57A0A2R6QNQ1_ACTCH; Ethylene-responsive transcription factor TINY like
STRINGXP_009610624.15e-58(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.12e-40ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]