PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf02085g03002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family ERF
Protein Properties Length: 254aa    MW: 28457.8 Da    PI: 5.0589
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf02085g03002.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.55.8e-1771120255
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                y+GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+ +++g
  Peinf101Scf02085g03002.1  71 VYHGVRKRT-WGKWVSEIREPRK---KSRIWLGTFATAEMAARAHDVAAIAIKG 120
                               69****887.**********843...6**********************99887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.4E-3170129IPR001471AP2/ERF domain
SuperFamilySSF541714.9E-2171129IPR016177DNA-binding domain
PfamPF008472.1E-1171120IPR001471AP2/ERF domain
SMARTSM003802.1E-3471134IPR001471AP2/ERF domain
PROSITE profilePS5103222.73471128IPR001471AP2/ERF domain
PRINTSPR003675.7E-107283IPR001471AP2/ERF domain
CDDcd000181.17E-3272130No hitNo description
PRINTSPR003675.7E-1094110IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MAEETLIFNN TDNPKPSNFT TSSTSTPCSP LTKRPNLEAD KQETKKKTKY SDIECDSHNM  60
NKKIDDLKHR VYHGVRKRTW GKWVSEIREP RKKSRIWLGT FATAEMAARA HDVAAIAIKG  120
RLAVLNFPEL AHLFPKPAST CAKDIQSAAA KAAALDIPSI SCISEQSQGE LIEETEDSIR  180
ESSSSTSSLR SNEDPFLDLP DLLLDLSQQI DKCCDYNSPI WELAGAESND SSHSEFWPQD  240
LYLWDYSYGI VLDA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-17691281272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016432455.15e-95PREDICTED: ethylene-responsive transcription factor ERF038-like
SwissprotQ8LBQ75e-42ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A1S3WXP51e-93A0A1S3WXP5_TOBAC; ethylene-responsive transcription factor ERF038-like
STRINGXP_009610624.12e-93(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.13e-32ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]