PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf02016g04026.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family AP2
Protein Properties Length: 364aa    MW: 40773.9 Da    PI: 5.8728
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf02016g04026.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2667.2e-211566156
                       AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                              s y+GVr +k +g+Wv+eIr+p   gk++r++lg+f+t+e+Aa+a++aa++ l+g+
  Peinf101Scf02016g04026.1 15 SPYRGVRKRK-WGKWVSEIREP---GKKTRIWLGSFDTPEMAAAAYDAAALHLRGH 66
                              68*****999.**********8...557**************************97 PP

2AP255.61.3e-17183231355
                       AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               y+GVr +k +g+Wv+eIr+p   gk++r++lg++ t+e+Aa+a++ a+  l+ 
  Peinf101Scf02016g04026.1 183 YRGVRKRK-WGKWVSEIREP---GKKTRIWLGSYETPEMAAAAYDVAAFHLKR 231
                               9****999.**********8...557**********************98865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.11E-221574IPR016177DNA-binding domain
PROSITE profilePS5103223.0771673IPR001471AP2/ERF domain
SMARTSM003808.4E-371679IPR001471AP2/ERF domain
PRINTSPR003678.2E-101728IPR001471AP2/ERF domain
CDDcd000182.30E-221775No hitNo description
Gene3DG3DSA:3.30.730.104.6E-321774IPR001471AP2/ERF domain
PfamPF008471.2E-131766IPR001471AP2/ERF domain
PRINTSPR003678.2E-103955IPR001471AP2/ERF domain
PROSITE profilePS5103222.669182239IPR001471AP2/ERF domain
SMARTSM003802.6E-32182245IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-30182240IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-21182240IPR016177DNA-binding domain
CDDcd000187.04E-20183241No hitNo description
PfamPF008471.7E-11183230IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MEENNKSSKG GGVTSPYRGV RKRKWGKWVS EIREPGKKTR IWLGSFDTPE MAAAAYDAAA  60
LHLRGHAARL NFPELVNYIT KPASSSPEDV RLAAQEAALR VKMSTAGSVE SHEEMGSSSH  120
ATNNLAPITI GLSPSQIQAI NDFPMDSPNK MWSDIGEETM FTSNDYEMKK MEDLQESNNI  180
QMYRGVRKRK WGKWVSEIRE PGKKTRIWLG SYETPEMAAA AYDVAAFHLK RHKAQLNFPE  240
LIDSFPKPTS SKPEDVQMAA HEAAVRFKQQ TPMTPENGGS DGGGTVVPVR VGLSPSQIQA  300
INESPMDSPK MWMELAGALL LRDPVREYTC PSYSYNDPMI LCEDIGEFEE WDEMQQHHGS  360
IWDF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-1617244668ATERF1
3gcc_A2e-1617244668ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754502e-66HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009619745.11e-101PREDICTED: ethylene-responsive transcription factor ERF022-like
RefseqXP_016502765.11e-101PREDICTED: ethylene-responsive transcription factor ERF022-like
SwissprotQ9C9I24e-49ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLA0A2P5XD261e-107A0A2P5XD26_GOSBA; Uncharacterized protein
STRINGXP_009619745.11e-100(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.12e-48ERF family protein